miRNA display CGI


Results 41 - 60 of 280 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5124 5' -69 NC_001798.1 + 134167 0.77 0.062524
Target:  5'- -gCCGUCGcGGCcGCCCGCGCCgcgacggCCCCg -3'
miRNA:   3'- gaGGCGGC-CCGcCGGGCGCGGa------GGGG- -5'
5124 5' -69 NC_001798.1 + 132144 0.72 0.162944
Target:  5'- -gCCGCCGGG-GGCCggcgggcgggGCGCCcCCCCc -3'
miRNA:   3'- gaGGCGGCCCgCCGGg---------CGCGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 131383 0.67 0.343539
Target:  5'- aUCCcCUGGG-GGCCCG-GCgUCCCa -3'
miRNA:   3'- gAGGcGGCCCgCCGGGCgCGgAGGGg -5'
5124 5' -69 NC_001798.1 + 130230 0.73 0.131102
Target:  5'- uUCCGCguagcccgggucucCGGGCGGCCCGCcacGCCUagaaCCg -3'
miRNA:   3'- gAGGCG--------------GCCCGCCGGGCG---CGGAgg--GG- -5'
5124 5' -69 NC_001798.1 + 129354 0.67 0.326361
Target:  5'- -cCCGCCGGGCcuggcggggcccccGGaCCCGCcaaggcaucgauCCUCCCg -3'
miRNA:   3'- gaGGCGGCCCG--------------CC-GGGCGc-----------GGAGGGg -5'
5124 5' -69 NC_001798.1 + 128277 0.69 0.25011
Target:  5'- gCUCgGCCGGcaccucugGCGccugacGCgCCGCGCCcCCCCg -3'
miRNA:   3'- -GAGgCGGCC--------CGC------CG-GGCGCGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 128022 0.66 0.387366
Target:  5'- cCUCuCGCCGGGgGGCgCacaCGCCaucgaCCCg -3'
miRNA:   3'- -GAG-GCGGCCCgCCGgGc--GCGGag---GGG- -5'
5124 5' -69 NC_001798.1 + 127945 0.71 0.187032
Target:  5'- -gCC-CCGGGCgaaaaGGCCCGgccCGCgUCCCCg -3'
miRNA:   3'- gaGGcGGCCCG-----CCGGGC---GCGgAGGGG- -5'
5124 5' -69 NC_001798.1 + 126415 0.66 0.398108
Target:  5'- gUCCcCCGaGGCccccGGCCCugcggccaagcuaagGCGCCcgCCCCu -3'
miRNA:   3'- gAGGcGGC-CCG----CCGGG---------------CGCGGa-GGGG- -5'
5124 5' -69 NC_001798.1 + 126261 0.75 0.089875
Target:  5'- -gCCGCCGGGCGuccggacGCCCaaGCGgccCCUCCCCc -3'
miRNA:   3'- gaGGCGGCCCGC-------CGGG--CGC---GGAGGGG- -5'
5124 5' -69 NC_001798.1 + 125540 0.67 0.33659
Target:  5'- -gCCGCCGaGCgucaGGCCCGCcgacGCCUCgUCg -3'
miRNA:   3'- gaGGCGGCcCG----CCGGGCG----CGGAGgGG- -5'
5124 5' -69 NC_001798.1 + 125095 0.68 0.272779
Target:  5'- -cCCGUuucuuCGGGgGGCCCGUaGUCUCCgCg -3'
miRNA:   3'- gaGGCG-----GCCCgCCGGGCG-CGGAGGgG- -5'
5124 5' -69 NC_001798.1 + 124142 0.74 0.117286
Target:  5'- -cCCGCCGuGGCGGaggccugucCCUGCGUCgCCCCg -3'
miRNA:   3'- gaGGCGGC-CCGCC---------GGGCGCGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 123422 0.68 0.284719
Target:  5'- -cCCGCCGGGUcaCCgggGCGCCcCCCCc -3'
miRNA:   3'- gaGGCGGCCCGccGGg--CGCGGaGGGG- -5'
5124 5' -69 NC_001798.1 + 122624 0.71 0.170646
Target:  5'- aUCCggGCCGcgcuccaaGGCGGCCCGCGCauCUUCCa -3'
miRNA:   3'- gAGG--CGGC--------CCGCCGGGCGCG--GAGGGg -5'
5124 5' -69 NC_001798.1 + 122363 0.68 0.297068
Target:  5'- --gCGUgGGGCGGgCgaCGCGCCcgCCCCc -3'
miRNA:   3'- gagGCGgCCCGCCgG--GCGCGGa-GGGG- -5'
5124 5' -69 NC_001798.1 + 121959 0.7 0.219047
Target:  5'- -cCCGCCGccaccCGGUCCGCGCgCgCCCCa -3'
miRNA:   3'- gaGGCGGCcc---GCCGGGCGCG-GaGGGG- -5'
5124 5' -69 NC_001798.1 + 121464 0.68 0.278698
Target:  5'- gUCCccaGCgCGGGCGGgCUGUucGUCUCCCUg -3'
miRNA:   3'- gAGG---CG-GCCCGCCgGGCG--CGGAGGGG- -5'
5124 5' -69 NC_001798.1 + 120182 0.78 0.057233
Target:  5'- -gCCGCCGGGCGGCUCGCagugauagaagaggaGCUcgggCCCCg -3'
miRNA:   3'- gaGGCGGCCCGCCGGGCG---------------CGGa---GGGG- -5'
5124 5' -69 NC_001798.1 + 117521 0.68 0.261244
Target:  5'- -aCCgGCUGGGgcCGGCCCaGCcCCUCCCg -3'
miRNA:   3'- gaGG-CGGCCC--GCCGGG-CGcGGAGGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.