miRNA display CGI


Results 41 - 60 of 271 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5140 3' -64.6 NC_001798.1 + 134154 0.75 0.152588
Target:  5'- cUCgGCCcCCGggGCCGUCGCggCCgCCCg -3'
miRNA:   3'- cAGgCGGcGGCuuCGGCAGCG--GG-GGG- -5'
5140 3' -64.6 NC_001798.1 + 133471 0.67 0.464645
Target:  5'- -gCCGaCGCCcuGAGCgGcUGCCCCCCg -3'
miRNA:   3'- caGGCgGCGGc-UUCGgCaGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 133026 0.72 0.248791
Target:  5'- cGUCgCGCCgGCCGAGGUgGUCGCgCUCa -3'
miRNA:   3'- -CAG-GCGG-CGGCUUCGgCAGCGgGGGg -5'
5140 3' -64.6 NC_001798.1 + 132140 0.8 0.073002
Target:  5'- cUgCGCCGCCgGggGCCGgcgggcggggCGCCCCCCc -3'
miRNA:   3'- cAgGCGGCGG-CuuCGGCa---------GCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 129164 0.66 0.527522
Target:  5'- gGUUCGCCGC--GAGCCcaucuUCGCcaaCCCCCg -3'
miRNA:   3'- -CAGGCGGCGgcUUCGGc----AGCG---GGGGG- -5'
5140 3' -64.6 NC_001798.1 + 128318 1.11 0.000426
Target:  5'- cGUCCGCCGCCGAAGCCGUCGCCCCCCg -3'
miRNA:   3'- -CAGGCGGCGGCUUCGGCAGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 128290 0.71 0.284269
Target:  5'- cUCUGgCGCCuGAcgcGCCG-CGCCCCCCn -3'
miRNA:   3'- cAGGCgGCGG-CUu--CGGCaGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 127747 0.67 0.500136
Target:  5'- -gCCGCCGCaacaccCGgcGCCaagCGCCCCgCg -3'
miRNA:   3'- caGGCGGCG------GCuuCGGca-GCGGGGgG- -5'
5140 3' -64.6 NC_001798.1 + 127620 0.67 0.491147
Target:  5'- -gCCGCCcgaGCUGAGGCCGcugcuggugcUgGUCUCCCg -3'
miRNA:   3'- caGGCGG---CGGCUUCGGC----------AgCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 127397 0.69 0.38999
Target:  5'- -aCCaGCucuCGCCGGAcuuuGCCGUgGCCCUCCu -3'
miRNA:   3'- caGG-CG---GCGGCUU----CGGCAgCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 126693 0.68 0.447397
Target:  5'- gGUuuGCCG-UGGAGCuCGUCGCgaCCCUg -3'
miRNA:   3'- -CAggCGGCgGCUUCG-GCAGCGg-GGGG- -5'
5140 3' -64.6 NC_001798.1 + 126468 0.72 0.258456
Target:  5'- gGUCCGagacggccaugaccUCGCCc---CCGUCGCCCCCCu -3'
miRNA:   3'- -CAGGC--------------GGCGGcuucGGCAGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 126393 0.71 0.284269
Target:  5'- -gCCGCuCGUcuCGucGCCGcUCGUCCCCCg -3'
miRNA:   3'- caGGCG-GCG--GCuuCGGC-AGCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 125537 0.69 0.38999
Target:  5'- -aUCGCCGCCGAGcgucaggcccGCCGaCGCCUcgucgacgCCCa -3'
miRNA:   3'- caGGCGGCGGCUU----------CGGCaGCGGG--------GGG- -5'
5140 3' -64.6 NC_001798.1 + 125333 0.68 0.430511
Target:  5'- cUCCaGCUugGCCGu-GUgGUCGCCCCCa -3'
miRNA:   3'- cAGG-CGG--CGGCuuCGgCAGCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 124142 0.69 0.397894
Target:  5'- -cCCGCCgugGCgGAGGCCugucccugcGUCGCCCCg- -3'
miRNA:   3'- caGGCGG---CGgCUUCGG---------CAGCGGGGgg -5'
5140 3' -64.6 NC_001798.1 + 123836 0.69 0.395512
Target:  5'- -cCCGCCGCCGAacagcucgcggacgAGcCCGUgGCCCa-- -3'
miRNA:   3'- caGGCGGCGGCU--------------UC-GGCAgCGGGggg -5'
5140 3' -64.6 NC_001798.1 + 123420 0.72 0.266052
Target:  5'- -gCC-CCGCCGGGucaCCGgggCGCCCCCCc -3'
miRNA:   3'- caGGcGGCGGCUUc--GGCa--GCGGGGGG- -5'
5140 3' -64.6 NC_001798.1 + 122431 0.74 0.180183
Target:  5'- cUgUGCCGCCGAGcgcGUCGUgCGCCCCCa -3'
miRNA:   3'- cAgGCGGCGGCUU---CGGCA-GCGGGGGg -5'
5140 3' -64.6 NC_001798.1 + 121959 0.69 0.359423
Target:  5'- -cCCGCCGCCacccGGuCCGcgCGCgCCCCa -3'
miRNA:   3'- caGGCGGCGGcu--UC-GGCa-GCGgGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.