miRNA display CGI


Results 1 - 20 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5547 5' -55.3 NC_001806.1 + 89556 0.66 0.945774
Target:  5'- gCCCGGuuuauucGCGUcgGCccgGCC-GGCCGGGc -3'
miRNA:   3'- gGGGUCu------CGUAuuUG---UGGuCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 146664 0.66 0.945774
Target:  5'- uCCCCGGAccacggguGCcgAGAC-CgCAGGCUGcGGa -3'
miRNA:   3'- -GGGGUCU--------CGuaUUUGuG-GUCCGGC-CC- -5'
5547 5' -55.3 NC_001806.1 + 127926 0.66 0.945774
Target:  5'- gCCgAGGGCAaAGGCggcgACCAGGgCGaGGg -3'
miRNA:   3'- gGGgUCUCGUaUUUG----UGGUCCgGC-CC- -5'
5547 5' -55.3 NC_001806.1 + 100092 0.66 0.945774
Target:  5'- aCCCCAGGGUcu---C-CCGcGGCCGGc -3'
miRNA:   3'- -GGGGUCUCGuauuuGuGGU-CCGGCCc -5'
5547 5' -55.3 NC_001806.1 + 64327 0.66 0.945334
Target:  5'- gUCCAGAGCcUGGGCcaggaucACCAG-CUGGGc -3'
miRNA:   3'- gGGGUCUCGuAUUUG-------UGGUCcGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 76324 0.66 0.941275
Target:  5'- aCCCGGcGGCGgccgccGAGCuuguCCGGGCaGGGg -3'
miRNA:   3'- gGGGUC-UCGUa-----UUUGu---GGUCCGgCCC- -5'
5547 5' -55.3 NC_001806.1 + 51385 0.66 0.941275
Target:  5'- aCCCCGGAGgGgcuccuuAGCGC--GGCCGuGGg -3'
miRNA:   3'- -GGGGUCUCgUau-----UUGUGguCCGGC-CC- -5'
5547 5' -55.3 NC_001806.1 + 30238 0.66 0.941275
Target:  5'- gCCCC-GuGCGUgcGAGCGCCGccuCCGGGg -3'
miRNA:   3'- -GGGGuCuCGUA--UUUGUGGUcc-GGCCC- -5'
5547 5' -55.3 NC_001806.1 + 113380 0.66 0.941275
Target:  5'- gUCCGGcGGCGUuccgGGACGCCcgGGGCCuGGa -3'
miRNA:   3'- gGGGUC-UCGUA----UUUGUGG--UCCGGcCC- -5'
5547 5' -55.3 NC_001806.1 + 105696 0.66 0.936541
Target:  5'- gCCCAGGGCucgca-GCCAacGUCGGGg -3'
miRNA:   3'- gGGGUCUCGuauuugUGGUc-CGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 3221 0.66 0.936541
Target:  5'- uCCCCgcgcAGGcGCAUGAGCACCAGcGCg--- -3'
miRNA:   3'- -GGGG----UCU-CGUAUUUGUGGUC-CGgccc -5'
5547 5' -55.3 NC_001806.1 + 138808 0.66 0.931571
Target:  5'- cCCCCGgcGAGCGUGcguuugauuuuaAGCAacUgGGGCCGcGGg -3'
miRNA:   3'- -GGGGU--CUCGUAU------------UUGU--GgUCCGGC-CC- -5'
5547 5' -55.3 NC_001806.1 + 24494 0.66 0.931571
Target:  5'- uCCCCGcgcGAGUAc---CGCCGGGCCGu- -3'
miRNA:   3'- -GGGGU---CUCGUauuuGUGGUCCGGCcc -5'
5547 5' -55.3 NC_001806.1 + 100380 0.66 0.931571
Target:  5'- cUCCCGucgccGGGCG---GCGCgGgGGCCGGGg -3'
miRNA:   3'- -GGGGU-----CUCGUauuUGUGgU-CCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 77484 0.66 0.931571
Target:  5'- aCCCgCAGAuGCu---GCGCC--GCCGGGg -3'
miRNA:   3'- -GGG-GUCU-CGuauuUGUGGucCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 147707 0.66 0.930549
Target:  5'- gCCCCGGAgGCGgcgcucgcacGCACgGGGCCacggccgcgcGGGg -3'
miRNA:   3'- -GGGGUCU-CGUauu-------UGUGgUCCGG----------CCC- -5'
5547 5' -55.3 NC_001806.1 + 26792 0.66 0.928475
Target:  5'- aCCgCGGAGCAccugGcgcgccugcgccugcGACGCgCGGGCgGGGa -3'
miRNA:   3'- -GGgGUCUCGUa---U---------------UUGUG-GUCCGgCCC- -5'
5547 5' -55.3 NC_001806.1 + 67154 0.66 0.926364
Target:  5'- aCCCCAGGGCGgucGccuccaucagcuGGCcCCAGGCCu-- -3'
miRNA:   3'- -GGGGUCUCGUa--U------------UUGuGGUCCGGccc -5'
5547 5' -55.3 NC_001806.1 + 32940 0.66 0.926364
Target:  5'- gCgCCGGGcCGUugugGGGCcCCGGGCCGGGn -3'
miRNA:   3'- -GgGGUCUcGUA----UUUGuGGUCCGGCCC- -5'
5547 5' -55.3 NC_001806.1 + 3104 0.66 0.926364
Target:  5'- gCCgCGGAGCu----CGgCAGGCgCGGGu -3'
miRNA:   3'- -GGgGUCUCGuauuuGUgGUCCG-GCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.