miRNA display CGI


Results 41 - 60 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5559 3' -62.5 NC_001806.1 + 60979 0.66 0.666842
Target:  5'- gGCCCCCC-CaCCCGCGuucuacaaggacgucCuGGccaaauucUGGGACGa -3'
miRNA:   3'- -CGGGGGGaG-GGGCGU---------------GuCU--------ACCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 59002 0.66 0.643519
Target:  5'- gGCgCCCCCUCCuCCG-GCugcccGA-GGGACGc -3'
miRNA:   3'- -CG-GGGGGAGG-GGCgUGu----CUaCCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 57891 0.73 0.263025
Target:  5'- cGCCCCCCgagcgcCCCCGCuuGGucGUGGGAg- -3'
miRNA:   3'- -CGGGGGGa-----GGGGCGugUC--UACCCUgc -5'
5559 3' -62.5 NC_001806.1 + 55270 0.66 0.652276
Target:  5'- gGCCCCCUccgCCCagaGCACguggggguccguuAGGUugGGGGCGc -3'
miRNA:   3'- -CGGGGGGa--GGGg--CGUG-------------UCUA--CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 51008 0.67 0.60459
Target:  5'- cCCCCCCgcCCCCGUaaGCGGcgGGucCGu -3'
miRNA:   3'- cGGGGGGa-GGGGCG--UGUCuaCCcuGC- -5'
5559 3' -62.5 NC_001806.1 + 50928 0.68 0.537396
Target:  5'- cGCCCCgCCUCCUCaGCGCcccGGGcccccguguccGGGACGg -3'
miRNA:   3'- -CGGGG-GGAGGGG-CGUG---UCUa----------CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 47234 0.66 0.633782
Target:  5'- gGCCCCCC-CgCUGUACGcaacGGGGCGc -3'
miRNA:   3'- -CGGGGGGaGgGGCGUGUcua-CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 47059 0.7 0.396314
Target:  5'- cGUCCCacaCUCUCUGgGCGGGcgGGGACGa -3'
miRNA:   3'- -CGGGGg--GAGGGGCgUGUCUa-CCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 46364 0.66 0.662962
Target:  5'- cGCCCCCCcaaaCCCCGaCGCgccauGGAccccccGGGugGc -3'
miRNA:   3'- -CGGGGGGa---GGGGC-GUG-----UCUa-----CCCugC- -5'
5559 3' -62.5 NC_001806.1 + 46175 0.76 0.164512
Target:  5'- cGCCCCCCgggccCCCCGaacccaGCGGGUGGcGACu -3'
miRNA:   3'- -CGGGGGGa----GGGGCg-----UGUCUACC-CUGc -5'
5559 3' -62.5 NC_001806.1 + 45548 0.67 0.584245
Target:  5'- uUCCCCUUCCUCGC--GGAaaccgagaccguuUGGGGCGu -3'
miRNA:   3'- cGGGGGGAGGGGCGugUCU-------------ACCCUGC- -5'
5559 3' -62.5 NC_001806.1 + 44114 0.67 0.575564
Target:  5'- -aCCCCCggUCCCGCGCucgcucGggGGGGCc -3'
miRNA:   3'- cgGGGGGa-GGGGCGUGu-----CuaCCCUGc -5'
5559 3' -62.5 NC_001806.1 + 41354 0.66 0.653248
Target:  5'- uGCCCCCCggcaUCCaggCCGC-CAG--GGGGCa -3'
miRNA:   3'- -CGGGGGG----AGG---GGCGuGUCuaCCCUGc -5'
5559 3' -62.5 NC_001806.1 + 38699 0.68 0.490092
Target:  5'- cGCCCCCCgggcggggCCCCcgccccaccuccgGCACAGAcaaGGACc -3'
miRNA:   3'- -CGGGGGGa-------GGGG-------------CGUGUCUac-CCUGc -5'
5559 3' -62.5 NC_001806.1 + 37587 0.68 0.527985
Target:  5'- gGCCCUCCUUggCCCGC-CAGcaccGGGGCc -3'
miRNA:   3'- -CGGGGGGAG--GGGCGuGUCua--CCCUGc -5'
5559 3' -62.5 NC_001806.1 + 33341 0.67 0.575564
Target:  5'- cGCCCCUUggccgCCCCgGCuGCAGG-GGGGCc -3'
miRNA:   3'- -CGGGGGGa----GGGG-CG-UGUCUaCCCUGc -5'
5559 3' -62.5 NC_001806.1 + 31168 0.68 0.541177
Target:  5'- uGCCCCCCgaguacccgacggcCCCCGCGuCGGAgUGGaACa -3'
miRNA:   3'- -CGGGGGGa-------------GGGGCGU-GUCU-ACCcUGc -5'
5559 3' -62.5 NC_001806.1 + 30835 0.66 0.643519
Target:  5'- aCCUCCCUcggcCCCCGCGCuGcuucUGGGccGCGg -3'
miRNA:   3'- cGGGGGGA----GGGGCGUGuCu---ACCC--UGC- -5'
5559 3' -62.5 NC_001806.1 + 30770 0.66 0.662962
Target:  5'- cGUCCUCCUCCgcuuCCGCcuccuCGGgcGGGGCc -3'
miRNA:   3'- -CGGGGGGAGG----GGCGu----GUCuaCCCUGc -5'
5559 3' -62.5 NC_001806.1 + 30620 0.68 0.518635
Target:  5'- aCCCCCC-CUCCGacuCAGGgccgggGGGGCGc -3'
miRNA:   3'- cGGGGGGaGGGGCgu-GUCUa-----CCCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.