miRNA display CGI


Results 1 - 20 of 172 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5574 3' -61.5 NC_001806.1 + 72718 0.66 0.680705
Target:  5'- ---gUGGCCCUgaagGGUaCCCCAcccacGGAUCCCc -3'
miRNA:   3'- auggACCGGGG----UCA-GGGGU-----UCUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 82517 0.66 0.680705
Target:  5'- gGCCgguguagGGCuugCCCAGUCCCgcCAuGGCgCCCg -3'
miRNA:   3'- aUGGa------CCG---GGGUCAGGG--GUuCUG-GGG- -5'
5574 3' -61.5 NC_001806.1 + 28523 0.66 0.680705
Target:  5'- cGCagGGCCCgGGgucgCCgUggGACCCCc -3'
miRNA:   3'- aUGgaCCGGGgUCa---GGgGuuCUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 106430 0.66 0.680705
Target:  5'- gACCUGGUuggccaCCCGGggCCUguuGAGAUCCCc -3'
miRNA:   3'- aUGGACCG------GGGUCagGGG---UUCUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 99787 0.66 0.680705
Target:  5'- gUugUUGGUUCCGGUCCCCc--ACCUg -3'
miRNA:   3'- -AugGACCGGGGUCAGGGGuucUGGGg -5'
5574 3' -61.5 NC_001806.1 + 102332 0.66 0.680705
Target:  5'- gUACUcGcGUCCCGGgggacgucCCCCGGGGCCgCCg -3'
miRNA:   3'- -AUGGaC-CGGGGUCa-------GGGGUUCUGG-GG- -5'
5574 3' -61.5 NC_001806.1 + 58505 0.66 0.680705
Target:  5'- cUAUC-GGCCCCGGUCgCguuaAGGACCUUg -3'
miRNA:   3'- -AUGGaCCGGGGUCAGgGg---UUCUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 118739 0.66 0.680705
Target:  5'- gUGCCUGGCggCCgCGGgaaUCCCCuGGccGCCCUg -3'
miRNA:   3'- -AUGGACCG--GG-GUC---AGGGGuUC--UGGGG- -5'
5574 3' -61.5 NC_001806.1 + 33135 0.66 0.674798
Target:  5'- cGCCgcggucgggGGCCCCucgUCCCGGGccguacgcggccuucGCCCCg -3'
miRNA:   3'- aUGGa--------CCGGGGucaGGGGUUC---------------UGGGG- -5'
5574 3' -61.5 NC_001806.1 + 80475 0.66 0.670852
Target:  5'- aACCccaaCCCCAG-CCCCA--ACCCCa -3'
miRNA:   3'- aUGGacc-GGGGUCaGGGGUucUGGGG- -5'
5574 3' -61.5 NC_001806.1 + 77534 0.66 0.670852
Target:  5'- gGCCcggGGCCCCuGGUgCUgcgCGAGGCCaCCa -3'
miRNA:   3'- aUGGa--CCGGGG-UCAgGG---GUUCUGG-GG- -5'
5574 3' -61.5 NC_001806.1 + 142785 0.66 0.670852
Target:  5'- cGCCUagggucGGCaCCCacagaaaccuacAGUCCCCAAGuguuuGCCCa -3'
miRNA:   3'- aUGGA------CCG-GGG------------UCAGGGGUUC-----UGGGg -5'
5574 3' -61.5 NC_001806.1 + 93189 0.66 0.670852
Target:  5'- -uCCUGGCCU--GUCCCC-GGGCCg- -3'
miRNA:   3'- auGGACCGGGguCAGGGGuUCUGGgg -5'
5574 3' -61.5 NC_001806.1 + 73050 0.66 0.670852
Target:  5'- -cCCgucggGGCCgCGGUCCCCGccuccguuccGGAgCCUg -3'
miRNA:   3'- auGGa----CCGGgGUCAGGGGU----------UCUgGGG- -5'
5574 3' -61.5 NC_001806.1 + 113368 0.66 0.670852
Target:  5'- -cCCUGGCgCUAuGUCCggcggcguuCCGGGACgCCCg -3'
miRNA:   3'- auGGACCGgGGU-CAGG---------GGUUCUG-GGG- -5'
5574 3' -61.5 NC_001806.1 + 20769 0.66 0.670852
Target:  5'- cGCC-GGCCCCugggacuauauGagCCCGAGgacGCCCCg -3'
miRNA:   3'- aUGGaCCGGGGu----------CagGGGUUC---UGGGG- -5'
5574 3' -61.5 NC_001806.1 + 130642 0.66 0.660969
Target:  5'- gGCCUGuCUCCGcGUUCCCAuGGCCaCCc -3'
miRNA:   3'- aUGGACcGGGGU-CAGGGGUuCUGG-GG- -5'
5574 3' -61.5 NC_001806.1 + 74377 0.66 0.660969
Target:  5'- gGCCUGGCUCUccGUCCUgAcGGACgCCg -3'
miRNA:   3'- aUGGACCGGGGu-CAGGGgU-UCUGgGG- -5'
5574 3' -61.5 NC_001806.1 + 37997 0.66 0.659979
Target:  5'- cGCCggcgggGGUCCgacaaaccaucggCAG-CCCCGGGACCaCCg -3'
miRNA:   3'- aUGGa-----CCGGG-------------GUCaGGGGUUCUGG-GG- -5'
5574 3' -61.5 NC_001806.1 + 32297 0.66 0.651064
Target:  5'- gUGCCagagaucaCCCCGGUCCCCcGGcACCCg -3'
miRNA:   3'- -AUGGacc-----GGGGUCAGGGGuUC-UGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.