miRNA display CGI


Results 1 - 20 of 100 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5580 3' -58.1 NC_001806.1 + 128973 0.66 0.855096
Target:  5'- gCGCGGauguuguaCGGgGGggauuuggccgaaugGGUGCCCCGGguUCACc -3'
miRNA:   3'- aGCGCC--------GCCgCU---------------UCAUGGGGCU--AGUG- -5'
5580 3' -58.1 NC_001806.1 + 62307 0.66 0.855096
Target:  5'- -aGUGGCGGCGGgccuggcgcggagggGGUuUgUCGGUCACa -3'
miRNA:   3'- agCGCCGCCGCU---------------UCAuGgGGCUAGUG- -5'
5580 3' -58.1 NC_001806.1 + 2785 0.66 0.852024
Target:  5'- cCGCGGCGGCccGggGcGCCgCGggCu- -3'
miRNA:   3'- aGCGCCGCCG--CuuCaUGGgGCuaGug -5'
5580 3' -58.1 NC_001806.1 + 77271 0.66 0.852024
Target:  5'- aCGCGGUGGcCGggGaccugGCCCCa----- -3'
miRNA:   3'- aGCGCCGCC-GCuuCa----UGGGGcuagug -5'
5580 3' -58.1 NC_001806.1 + 141433 0.66 0.852024
Target:  5'- gCGCGGCcaaccGGCGGAuaACUCCGccCACg -3'
miRNA:   3'- aGCGCCG-----CCGCUUcaUGGGGCuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 51289 0.66 0.849699
Target:  5'- cUGCGGCuGGCGcGGUGCcugacgccugccaaCCUGAUcCGCg -3'
miRNA:   3'- aGCGCCG-CCGCuUCAUG--------------GGGCUA-GUG- -5'
5580 3' -58.1 NC_001806.1 + 6560 0.66 0.84421
Target:  5'- aCGCGGgGGCGGAGgagggggcucACCCgCGuUCGu -3'
miRNA:   3'- aGCGCCgCCGCUUCa---------UGGG-GCuAGUg -5'
5580 3' -58.1 NC_001806.1 + 77960 0.66 0.84421
Target:  5'- aCGCGGCGGCcccGGgGCCgCCGcUCGg -3'
miRNA:   3'- aGCGCCGCCGcu-UCaUGG-GGCuAGUg -5'
5580 3' -58.1 NC_001806.1 + 10044 0.66 0.84421
Target:  5'- gCGCGGUGG-GggGUuuguucuggaacACCCCGcgUAg -3'
miRNA:   3'- aGCGCCGCCgCuuCA------------UGGGGCuaGUg -5'
5580 3' -58.1 NC_001806.1 + 6089 0.66 0.84421
Target:  5'- cCG-GGCGGCGggGggcgggucuCUCCGGcgCACa -3'
miRNA:   3'- aGCgCCGCCGCuuCau-------GGGGCUa-GUG- -5'
5580 3' -58.1 NC_001806.1 + 63580 0.66 0.84421
Target:  5'- -aGuCGGCGaGCGAcaugcuGGUGUCCCGGUCGa -3'
miRNA:   3'- agC-GCCGC-CGCU------UCAUGGGGCUAGUg -5'
5580 3' -58.1 NC_001806.1 + 23328 0.66 0.842624
Target:  5'- -gGCGGCGGCccgcgacCCCCGAagACg -3'
miRNA:   3'- agCGCCGCCGcuucau-GGGGCUagUG- -5'
5580 3' -58.1 NC_001806.1 + 65623 0.66 0.83621
Target:  5'- aCGUGGUGGCcgugggcgaGAGGgGCCCCGGcgGCc -3'
miRNA:   3'- aGCGCCGCCG---------CUUCaUGGGGCUagUG- -5'
5580 3' -58.1 NC_001806.1 + 86402 0.66 0.83621
Target:  5'- aCGCGGCGGCc----GCUCCGGagACg -3'
miRNA:   3'- aGCGCCGCCGcuucaUGGGGCUagUG- -5'
5580 3' -58.1 NC_001806.1 + 4409 0.66 0.83621
Target:  5'- gCGCGGCcucggagaGGgGggGUGgCCCGggCGg -3'
miRNA:   3'- aGCGCCG--------CCgCuuCAUgGGGCuaGUg -5'
5580 3' -58.1 NC_001806.1 + 24368 0.66 0.833775
Target:  5'- uUCGCGcGCGuggaggccgcgcacGCGcgccuGUACCCCGA-CGCg -3'
miRNA:   3'- -AGCGC-CGC--------------CGCuu---CAUGGGGCUaGUG- -5'
5580 3' -58.1 NC_001806.1 + 39190 0.66 0.831324
Target:  5'- -gGCGGCGGCcuugucugcguucuuGggGgccggGCCCCGc-CGCa -3'
miRNA:   3'- agCGCCGCCG---------------CuuCa----UGGGGCuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 134452 0.66 0.831324
Target:  5'- aCGCGuucgaauggggacguGCGGCGAcccgcgACCCCGAgcCACg -3'
miRNA:   3'- aGCGC---------------CGCCGCUuca---UGGGGCUa-GUG- -5'
5580 3' -58.1 NC_001806.1 + 78670 0.66 0.828031
Target:  5'- gUGCuGGCGGC--AGUGCuCCUGggCGCg -3'
miRNA:   3'- aGCG-CCGCCGcuUCAUG-GGGCuaGUG- -5'
5580 3' -58.1 NC_001806.1 + 132148 0.66 0.828031
Target:  5'- -gGCGGCGcGCGuugccGAGcAUCCCGAcgCGCg -3'
miRNA:   3'- agCGCCGC-CGC-----UUCaUGGGGCUa-GUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.