miRNA display CGI


Results 1 - 20 of 84 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5586 3' -56.3 NC_001806.1 + 73539 0.66 0.90932
Target:  5'- cUGGCcuccACGCGCcu--GAGccUGGCCGACg -3'
miRNA:   3'- cGCCG----UGCGCGcuauCUC--AUCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 100497 0.66 0.90932
Target:  5'- uGCGGCGCGgcaGCGAUcg---AGCCGGg -3'
miRNA:   3'- -CGCCGUGCg--CGCUAucucaUCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 91985 0.66 0.903168
Target:  5'- cGUGGaC-CGCGaGGUGGAGcAGCUGAUg -3'
miRNA:   3'- -CGCC-GuGCGCgCUAUCUCaUCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 102477 0.66 0.903168
Target:  5'- cGCGGUA---GCGGUAcuGUGGCCGGCc -3'
miRNA:   3'- -CGCCGUgcgCGCUAUcuCAUCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 37990 0.66 0.903168
Target:  5'- gGgGGCACGC-CGGcGGGGgu-CCGACa -3'
miRNA:   3'- -CgCCGUGCGcGCUaUCUCaucGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 71530 0.66 0.903168
Target:  5'- uGCgGGCGgGCGgGGgggGGGGUGGaaGACc -3'
miRNA:   3'- -CG-CCGUgCGCgCUa--UCUCAUCggCUG- -5'
5586 3' -56.3 NC_001806.1 + 3517 0.66 0.901277
Target:  5'- gGCGGCGuCGgggucgucgcccccCGCGggGGAGgcgGGCgCGGCg -3'
miRNA:   3'- -CGCCGU-GC--------------GCGCuaUCUCa--UCG-GCUG- -5'
5586 3' -56.3 NC_001806.1 + 152077 0.66 0.896784
Target:  5'- uGCGcGCGCGCGCGcccgcGGGgGGCCcgGGCu -3'
miRNA:   3'- -CGC-CGUGCGCGCuau--CUCaUCGG--CUG- -5'
5586 3' -56.3 NC_001806.1 + 24973 0.66 0.896784
Target:  5'- gGCGGCGCGUuCGAgggggacGGGGUgcuguaacgGGCCGGg -3'
miRNA:   3'- -CGCCGUGCGcGCUa------UCUCA---------UCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 119552 0.66 0.896784
Target:  5'- aGCGGgG-GCGCcAUGGGGgcGGCUGACg -3'
miRNA:   3'- -CGCCgUgCGCGcUAUCUCa-UCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 122247 0.66 0.896784
Target:  5'- uGCGG-AUGUGCGcc-GuGUAGCCGAUc -3'
miRNA:   3'- -CGCCgUGCGCGCuauCuCAUCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 76252 0.66 0.896133
Target:  5'- cGCGGCGCGCgaucggaagcgugGCGcUGGAccUGGCCGcCg -3'
miRNA:   3'- -CGCCGUGCG-------------CGCuAUCUc-AUCGGCuG- -5'
5586 3' -56.3 NC_001806.1 + 50685 0.66 0.89017
Target:  5'- gGCGGcCACGCGCGccauucUGGCCGcCg -3'
miRNA:   3'- -CGCC-GUGCGCGCuaucucAUCGGCuG- -5'
5586 3' -56.3 NC_001806.1 + 151562 0.66 0.89017
Target:  5'- gGCGGCGgGggcCGCGAUGGcGgcGgCGGCg -3'
miRNA:   3'- -CGCCGUgC---GCGCUAUCuCauCgGCUG- -5'
5586 3' -56.3 NC_001806.1 + 112573 0.66 0.89017
Target:  5'- aCGGCGCuCGUGAUGGGcaaGGCCGuGCg -3'
miRNA:   3'- cGCCGUGcGCGCUAUCUca-UCGGC-UG- -5'
5586 3' -56.3 NC_001806.1 + 26977 0.66 0.883332
Target:  5'- cGCGGCuCGUGgGcccgcGAGcgGGCCGACc -3'
miRNA:   3'- -CGCCGuGCGCgCuau--CUCa-UCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 150995 0.66 0.883332
Target:  5'- cGCGGCGCGC-CaGgcGGGcGGCCGAg -3'
miRNA:   3'- -CGCCGUGCGcGcUauCUCaUCGGCUg -5'
5586 3' -56.3 NC_001806.1 + 122359 0.66 0.883332
Target:  5'- gGUGGCGCGCugGCGGaAGuGgcGCaCGGCc -3'
miRNA:   3'- -CGCCGUGCG--CGCUaUCuCauCG-GCUG- -5'
5586 3' -56.3 NC_001806.1 + 56622 0.66 0.883332
Target:  5'- -gGGC-CGCGCGAcccUGGccGGUgcgaccucaucGGCCGGCg -3'
miRNA:   3'- cgCCGuGCGCGCU---AUC--UCA-----------UCGGCUG- -5'
5586 3' -56.3 NC_001806.1 + 33591 0.66 0.881938
Target:  5'- cGCgGGCACGCGCGcccuuaaUGGaCCGGCg -3'
miRNA:   3'- -CG-CCGUGCGCGCuaucuc-AUC-GGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.