miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5592 3' -62.6 NC_001806.1 + 130461 0.66 0.634979
Target:  5'- aGCuGCGGUGCCGGgaUCCC-GAGGCgUCg -3'
miRNA:   3'- cUGuCGCUGCGGCC--AGGGcCUCCG-AG- -5'
5592 3' -62.6 NC_001806.1 + 3592 0.66 0.625174
Target:  5'- ---cGCGGCGCCGuaCCCGGcGGGCa- -3'
miRNA:   3'- cuguCGCUGCGGCcaGGGCC-UCCGag -5'
5592 3' -62.6 NC_001806.1 + 3512 0.66 0.615375
Target:  5'- uGGCgGGCGGCGUCGGggucgucgCCCcccgcgggGGAGGCg- -3'
miRNA:   3'- -CUG-UCGCUGCGGCCa-------GGG--------CCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 38149 0.66 0.615375
Target:  5'- aGACGGU--CGCCGGgCCCcGAGGCg- -3'
miRNA:   3'- -CUGUCGcuGCGGCCaGGGcCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 23305 0.66 0.605586
Target:  5'- -cCGGCccGGC-CCGGccgCCCGGAGGCg- -3'
miRNA:   3'- cuGUCG--CUGcGGCCa--GGGCCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 147495 0.66 0.605586
Target:  5'- --gGGCGGCGCCGGa---GGGGGCg- -3'
miRNA:   3'- cugUCGCUGCGGCCagggCCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 102945 0.66 0.605586
Target:  5'- ---cGCGACgGCCaGaCCCGGGGGCg- -3'
miRNA:   3'- cuguCGCUG-CGGcCaGGGCCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 113382 0.66 0.595816
Target:  5'- -cCGGCGGCGuuCCGGgacgCCCGG-GGCc- -3'
miRNA:   3'- cuGUCGCUGC--GGCCa---GGGCCuCCGag -5'
5592 3' -62.6 NC_001806.1 + 34399 0.66 0.58607
Target:  5'- gGGCGGCgGugGCCGGgCCgGGccGGGC-Cg -3'
miRNA:   3'- -CUGUCG-CugCGGCCaGGgCC--UCCGaG- -5'
5592 3' -62.6 NC_001806.1 + 76327 0.66 0.58607
Target:  5'- cGGCGGCGGcCGCCGagcuuGUCCgGGcaGGGgUCa -3'
miRNA:   3'- -CUGUCGCU-GCGGC-----CAGGgCC--UCCgAG- -5'
5592 3' -62.6 NC_001806.1 + 147768 0.66 0.58607
Target:  5'- cGCGGCcgcgGACGCgGGgggCCCGG-GGCg- -3'
miRNA:   3'- cUGUCG----CUGCGgCCa--GGGCCuCCGag -5'
5592 3' -62.6 NC_001806.1 + 50544 0.66 0.58607
Target:  5'- cGCAGCG-CGCCGGcugCUCGccaacagcGGGCUCa -3'
miRNA:   3'- cUGUCGCuGCGGCCa--GGGCc-------UCCGAG- -5'
5592 3' -62.6 NC_001806.1 + 34316 0.66 0.58607
Target:  5'- gGGCGGCG-CGCCGGa--CGGGGcGCUg -3'
miRNA:   3'- -CUGUCGCuGCGGCCaggGCCUC-CGAg -5'
5592 3' -62.6 NC_001806.1 + 24870 0.66 0.58607
Target:  5'- uGGCGGCGGCggggGCCguggaGGUgCUGGGGGCg- -3'
miRNA:   3'- -CUGUCGCUG----CGG-----CCAgGGCCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 36538 0.66 0.585097
Target:  5'- aGCAGUGGauugugcCGCUGGUCUCacaGGAGGCg- -3'
miRNA:   3'- cUGUCGCU-------GCGGCCAGGG---CCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 117760 0.67 0.576355
Target:  5'- uGGCguGGCGACgGCCGaGUCCUGGcuGCUa -3'
miRNA:   3'- -CUG--UCGCUG-CGGC-CAGGGCCucCGAg -5'
5592 3' -62.6 NC_001806.1 + 92923 0.67 0.576355
Target:  5'- --gGGCGGgGCgGG-CCUGGAGGC-Cg -3'
miRNA:   3'- cugUCGCUgCGgCCaGGGCCUCCGaG- -5'
5592 3' -62.6 NC_001806.1 + 119031 0.67 0.566677
Target:  5'- uGGCGGCGcuGCGCCuugcguGGggCUCGGGGGCg- -3'
miRNA:   3'- -CUGUCGC--UGCGG------CCa-GGGCCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 150055 0.67 0.565711
Target:  5'- cGGCAGUGACgauucccccaaugGCCGcgcGUCCCaggGGAGGCa- -3'
miRNA:   3'- -CUGUCGCUG-------------CGGC---CAGGG---CCUCCGag -5'
5592 3' -62.6 NC_001806.1 + 55222 0.67 0.562817
Target:  5'- cGGCAGCGGC-CCGGUgacagaauacaaCGGAGGgUCg -3'
miRNA:   3'- -CUGUCGCUGcGGCCAgg----------GCCUCCgAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.