miRNA display CGI


Results 1 - 20 of 250 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5602 5' -66 NC_001806.1 + 93483 0.66 0.497622
Target:  5'- aGGUGGCGCaCGAgGcCGaGGCccuagucaGCCAACu -3'
miRNA:   3'- gCCGCCGCGgGCUgC-GC-CCG--------CGGUUG- -5'
5602 5' -66 NC_001806.1 + 33304 0.66 0.497622
Target:  5'- -aGCGGcCGgCCGGCGCuuaGGGggaggauguCGCCGACg -3'
miRNA:   3'- gcCGCC-GCgGGCUGCG---CCC---------GCGGUUG- -5'
5602 5' -66 NC_001806.1 + 90259 0.66 0.497622
Target:  5'- -cGUGGCGCCCcugguCGUGGGC-CUGACc -3'
miRNA:   3'- gcCGCCGCGGGcu---GCGCCCGcGGUUG- -5'
5602 5' -66 NC_001806.1 + 13271 0.66 0.497622
Target:  5'- cCGGCGGUcUCaaACGCGGGgGCguGCa -3'
miRNA:   3'- -GCCGCCGcGGgcUGCGCCCgCGguUG- -5'
5602 5' -66 NC_001806.1 + 2460 0.66 0.497622
Target:  5'- cCGGCGGC-CCCGugGgggUGGGgGUUAu- -3'
miRNA:   3'- -GCCGCCGcGGGCugC---GCCCgCGGUug -5'
5602 5' -66 NC_001806.1 + 67054 0.66 0.497622
Target:  5'- uCGGCGGCGUCgCG-CGCGucguacgaGGCGgCAcACg -3'
miRNA:   3'- -GCCGCCGCGG-GCuGCGC--------CCGCgGU-UG- -5'
5602 5' -66 NC_001806.1 + 141426 0.66 0.497622
Target:  5'- gGGCGGCGCgCGGCcaaccgGCGGauaacucCGCCcACg -3'
miRNA:   3'- gCCGCCGCGgGCUG------CGCCc------GCGGuUG- -5'
5602 5' -66 NC_001806.1 + 115073 0.66 0.497622
Target:  5'- uGGCGGgaaacCGCCUGGgGCcGGC-CCAGCc -3'
miRNA:   3'- gCCGCC-----GCGGGCUgCGcCCGcGGUUG- -5'
5602 5' -66 NC_001806.1 + 149763 0.66 0.492247
Target:  5'- uGGCgccccagacauGGCGCCCGGCcccucaccucgcgcuGgGGGCggcccucagGCCGGCg -3'
miRNA:   3'- gCCG-----------CCGCGGGCUG---------------CgCCCG---------CGGUUG- -5'
5602 5' -66 NC_001806.1 + 31080 0.66 0.488678
Target:  5'- aCGGgaaacaUGGCGaCCCGGCuGCGGGCcgcgguccCCGGCu -3'
miRNA:   3'- -GCC------GCCGC-GGGCUG-CGCCCGc-------GGUUG- -5'
5602 5' -66 NC_001806.1 + 127876 0.66 0.488678
Target:  5'- uGGUGcCGCCUgugauacagauaGGCGCGGGUG-CAGCg -3'
miRNA:   3'- gCCGCcGCGGG------------CUGCGCCCGCgGUUG- -5'
5602 5' -66 NC_001806.1 + 58016 0.66 0.488678
Target:  5'- uGGCugaccGCGUCCGACGCGGaGUcCUGGCu -3'
miRNA:   3'- gCCGc----CGCGGGCUGCGCC-CGcGGUUG- -5'
5602 5' -66 NC_001806.1 + 66428 0.66 0.488678
Target:  5'- gCGGUggGGCGCCCc-CGCaGGUccggcuGCCAGCg -3'
miRNA:   3'- -GCCG--CCGCGGGcuGCGcCCG------CGGUUG- -5'
5602 5' -66 NC_001806.1 + 38637 0.66 0.488678
Target:  5'- gGGUGGUGgauguccuuauaCCCGugGUGccGGgGCCGGCu -3'
miRNA:   3'- gCCGCCGC------------GGGCugCGC--CCgCGGUUG- -5'
5602 5' -66 NC_001806.1 + 138778 0.66 0.488678
Target:  5'- -cGCaGGCGUcgguaauggCCGACGCaGGCGCCcccGGCg -3'
miRNA:   3'- gcCG-CCGCG---------GGCUGCGcCCGCGG---UUG- -5'
5602 5' -66 NC_001806.1 + 71937 0.66 0.487788
Target:  5'- gGGCGaguggacGCGCgCGAcCGCGGGCccuggGCCGccGCg -3'
miRNA:   3'- gCCGC-------CGCGgGCU-GCGCCCG-----CGGU--UG- -5'
5602 5' -66 NC_001806.1 + 52132 0.66 0.483349
Target:  5'- gGGCGGCGgUcagCGACGUccuGGGCcaccugacgcgccuaGCCAACc -3'
miRNA:   3'- gCCGCCGCgG---GCUGCG---CCCG---------------CGGUUG- -5'
5602 5' -66 NC_001806.1 + 5941 0.66 0.479812
Target:  5'- gGGCGGgacCGCCCcaagGGgGCGGGgcCGCCGGg -3'
miRNA:   3'- gCCGCC---GCGGG----CUgCGCCC--GCGGUUg -5'
5602 5' -66 NC_001806.1 + 37989 0.66 0.479812
Target:  5'- uGGgGGCaCgCCGGCGgGGGU-CCGACa -3'
miRNA:   3'- gCCgCCGcG-GGCUGCgCCCGcGGUUG- -5'
5602 5' -66 NC_001806.1 + 112432 0.66 0.479812
Target:  5'- gGGCGGcCGgUCGACG-GGGUGCUc-- -3'
miRNA:   3'- gCCGCC-GCgGGCUGCgCCCGCGGuug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.