miRNA display CGI


Results 1 - 20 of 152 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5628 5' -58.1 NC_001806.1 + 27826 0.66 0.813597
Target:  5'- uUUGGgGGcGCCGGGUUGGUccccggggaCGGGGCCg -3'
miRNA:   3'- -AACUgCUcCGGUUCGAUCG---------GCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 21502 0.66 0.813597
Target:  5'- -cGGCGA--CCGGGCcccGGcCCGGGGCCg -3'
miRNA:   3'- aaCUGCUccGGUUCGa--UC-GGCUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 1341 0.66 0.813597
Target:  5'- -gGGCGuGGCCAAGCccGCCuccGCCc -3'
miRNA:   3'- aaCUGCuCCGGUUCGauCGGcucCGG- -5'
5628 5' -58.1 NC_001806.1 + 150664 0.66 0.813597
Target:  5'- gUUGGCcGGGCCccgccgcgcuGGCggccGCCGAuGGCCa -3'
miRNA:   3'- -AACUGcUCCGGu---------UCGau--CGGCU-CCGG- -5'
5628 5' -58.1 NC_001806.1 + 136966 0.66 0.813597
Target:  5'- -aGugGGGGCCcgcGAGCguggugcggucaUGGCgGcGGCCg -3'
miRNA:   3'- aaCugCUCCGG---UUCG------------AUCGgCuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 21736 0.66 0.812725
Target:  5'- -cGACGcGGCCGaccacgcacgcgaGGCgcgGGCCGucGGGCg -3'
miRNA:   3'- aaCUGCuCCGGU-------------UCGa--UCGGC--UCCGg -5'
5628 5' -58.1 NC_001806.1 + 134929 0.66 0.812725
Target:  5'- -cGGCGAuGGCCu-GCUugaggaugguggcGGCCGAccccucaucgucGGCCg -3'
miRNA:   3'- aaCUGCU-CCGGuuCGA-------------UCGGCU------------CCGG- -5'
5628 5' -58.1 NC_001806.1 + 107464 0.66 0.804803
Target:  5'- -cGACcuccGGaCCGcGCUGGCCcGGGCCg -3'
miRNA:   3'- aaCUGcu--CC-GGUuCGAUCGGcUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 145643 0.66 0.804803
Target:  5'- gUGGCGGGuGCCGGGggA-CCGGGGUg -3'
miRNA:   3'- aACUGCUC-CGGUUCgaUcGGCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 113873 0.66 0.804803
Target:  5'- --cGCGAcuGCCGGGUUAGCgCGggGGGCCa -3'
miRNA:   3'- aacUGCUc-CGGUUCGAUCG-GC--UCCGG- -5'
5628 5' -58.1 NC_001806.1 + 22192 0.66 0.804803
Target:  5'- gUGugGGcGcCCGAGCUGGgCGAcGCCg -3'
miRNA:   3'- aACugCUcC-GGUUCGAUCgGCUcCGG- -5'
5628 5' -58.1 NC_001806.1 + 126065 0.66 0.804803
Target:  5'- gUGAUGuucGGgCGGGUgaacgAGCCGAcGGCCc -3'
miRNA:   3'- aACUGCu--CCgGUUCGa----UCGGCU-CCGG- -5'
5628 5' -58.1 NC_001806.1 + 97987 0.66 0.799451
Target:  5'- --aACGAGGCCcgcAAGCUGaaccccaacgccaucGCCucGGCCa -3'
miRNA:   3'- aacUGCUCCGG---UUCGAU---------------CGGcuCCGG- -5'
5628 5' -58.1 NC_001806.1 + 24876 0.66 0.795852
Target:  5'- -cGGCgGGGGCCGuggagguGCUgggGGCgGAGGCg -3'
miRNA:   3'- aaCUG-CUCCGGUu------CGA---UCGgCUCCGg -5'
5628 5' -58.1 NC_001806.1 + 2393 0.66 0.795852
Target:  5'- cUGGCGcauccAGGCCGccaugcggcgcAGCgGGCCcGAGGCg -3'
miRNA:   3'- aACUGC-----UCCGGU-----------UCGaUCGG-CUCCGg -5'
5628 5' -58.1 NC_001806.1 + 151449 0.66 0.795852
Target:  5'- -gGGCGGcGGCgGGGC-GGCCGcGGGCg -3'
miRNA:   3'- aaCUGCU-CCGgUUCGaUCGGC-UCCGg -5'
5628 5' -58.1 NC_001806.1 + 127023 0.66 0.795852
Target:  5'- -cGACGAcacgcucGCCGAGCUaugGGCCucucguucuccGGGGCCc -3'
miRNA:   3'- aaCUGCUc------CGGUUCGA---UCGG-----------CUCCGG- -5'
5628 5' -58.1 NC_001806.1 + 28175 0.66 0.795852
Target:  5'- --cGCGAGGUgAGG--GGCCGGGcGCCa -3'
miRNA:   3'- aacUGCUCCGgUUCgaUCGGCUC-CGG- -5'
5628 5' -58.1 NC_001806.1 + 109231 0.66 0.795852
Target:  5'- -cGugG-GGCCGGGCggGGCgGAauccugGGCCc -3'
miRNA:   3'- aaCugCuCCGGUUCGa-UCGgCU------CCGG- -5'
5628 5' -58.1 NC_001806.1 + 107020 0.66 0.795852
Target:  5'- --cGCGcuuGCCGGGUUGGCCGcccgcgGGGCCg -3'
miRNA:   3'- aacUGCuc-CGGUUCGAUCGGC------UCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.