miRNA display CGI


Results 1 - 20 of 265 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5664 3' -51.8 NC_001806.1 + 51382 0.66 0.986056
Target:  5'- ---cCCACCCCgGAGGG----GCUCCu -3'
miRNA:   3'- uuuaGGUGGGGgUUUCCguuuUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 147202 0.66 0.986056
Target:  5'- gGAcgCgGCCCCgGcggcggaaGAGGCG--GCCCCc -3'
miRNA:   3'- -UUuaGgUGGGGgU--------UUCCGUuuUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 149741 0.66 0.986056
Target:  5'- ---cCCAauauggcgcCCCCCAAuauGGC---GCCCCa -3'
miRNA:   3'- uuuaGGU---------GGGGGUUu--CCGuuuUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 120802 0.66 0.986056
Target:  5'- -cGUUgGCCCCCGccucuGGGGUuu-GCCCUc -3'
miRNA:   3'- uuUAGgUGGGGGU-----UUCCGuuuUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 46218 0.66 0.986056
Target:  5'- ---cCCGCggCCCCGgcGGCGGAGaccaCCCg -3'
miRNA:   3'- uuuaGGUG--GGGGUuuCCGUUUUg---GGG- -5'
5664 3' -51.8 NC_001806.1 + 91929 0.66 0.986056
Target:  5'- ---aCCAUCaucaCCAAccGCGAGGCCCUg -3'
miRNA:   3'- uuuaGGUGGg---GGUUucCGUUUUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 28677 0.66 0.986056
Target:  5'- gGAGgagCCGCCCgCCAuauuuGGGgGAcgccguggGACCCCc -3'
miRNA:   3'- -UUUa--GGUGGG-GGUu----UCCgUU--------UUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 74693 0.66 0.986056
Target:  5'- ---cUCGCCCCCGAu-GCGcGugCCCg -3'
miRNA:   3'- uuuaGGUGGGGGUUucCGUuUugGGG- -5'
5664 3' -51.8 NC_001806.1 + 66742 0.66 0.986056
Target:  5'- aAAcgCCGCgCCC--GGGCcccccAGCCCCa -3'
miRNA:   3'- -UUuaGGUGgGGGuuUCCGuu---UUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 92361 0.66 0.98499
Target:  5'- ---aCgGCCCCCGccgagagcagcuucgAGGGCGAcguugcccgcguGACCCUg -3'
miRNA:   3'- uuuaGgUGGGGGU---------------UUCCGUU------------UUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 17167 0.66 0.98499
Target:  5'- --cUCCaaggGCCCCCccggGAAGGCGggucuguggaccguaGGGCCCUu -3'
miRNA:   3'- uuuAGG----UGGGGG----UUUCCGU---------------UUUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 45759 0.66 0.984246
Target:  5'- ---aCCACCCCCGccGuCcGAACCCa -3'
miRNA:   3'- uuuaGGUGGGGGUuuCcGuUUUGGGg -5'
5664 3' -51.8 NC_001806.1 + 55856 0.66 0.984246
Target:  5'- --cUCCACaggaCCAc-GGCAAGGCCCa -3'
miRNA:   3'- uuuAGGUGgg--GGUuuCCGUUUUGGGg -5'
5664 3' -51.8 NC_001806.1 + 144129 0.66 0.984246
Target:  5'- --uUCCACCCUCc--GGCc---CCCCg -3'
miRNA:   3'- uuuAGGUGGGGGuuuCCGuuuuGGGG- -5'
5664 3' -51.8 NC_001806.1 + 7342 0.66 0.984246
Target:  5'- ---cCCAgagaCCCCAGGGuaccGCGuGACCCCa -3'
miRNA:   3'- uuuaGGUg---GGGGUUUC----CGUuUUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 19344 0.66 0.984246
Target:  5'- ---aCCGCCCCCcAAGccuccGgGGGGCCCUa -3'
miRNA:   3'- uuuaGGUGGGGGuUUC-----CgUUUUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 102086 0.66 0.984246
Target:  5'- ---aUgGCCUCCGAAGGgAcgGCUCCg -3'
miRNA:   3'- uuuaGgUGGGGGUUUCCgUuuUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 136830 0.66 0.982263
Target:  5'- ----aCACCCCCu--GGCccucgguauACCCCa -3'
miRNA:   3'- uuuagGUGGGGGuuuCCGuuu------UGGGG- -5'
5664 3' -51.8 NC_001806.1 + 101077 0.66 0.982263
Target:  5'- --cUCCAgCUgCAcgcAGGCGAucAGCCCCa -3'
miRNA:   3'- uuuAGGUgGGgGUu--UCCGUU--UUGGGG- -5'
5664 3' -51.8 NC_001806.1 + 295 0.66 0.982263
Target:  5'- ---cCCGCUCCCGc-GGCcccGCCCCc -3'
miRNA:   3'- uuuaGGUGGGGGUuuCCGuuuUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.