miRNA display CGI


Results 1 - 20 of 82 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5666 5' -68.2 NC_001806.1 + 80022 0.66 0.388568
Target:  5'- gCGGgCCGcagcGGcGCCUUacGCGCCCCgCUGUc -3'
miRNA:   3'- -GCCgGGCa---CC-CGGGA--CGCGGGG-GACA- -5'
5666 5' -68.2 NC_001806.1 + 22926 0.66 0.388568
Target:  5'- gGGaCCCGcGGGCCCcGCuUCCCCg-- -3'
miRNA:   3'- gCC-GGGCaCCCGGGaCGcGGGGGaca -5'
5666 5' -68.2 NC_001806.1 + 45388 0.66 0.388568
Target:  5'- uGcCCCGgGGGCCCUgGUGCCCUUuuaUGUa -3'
miRNA:   3'- gCcGGGCaCCCGGGA-CGCGGGGG---ACA- -5'
5666 5' -68.2 NC_001806.1 + 147303 0.66 0.38086
Target:  5'- gGGUCCc-GGGCCCacccuggccGCGCCCCCc-- -3'
miRNA:   3'- gCCGGGcaCCCGGGa--------CGCGGGGGaca -5'
5666 5' -68.2 NC_001806.1 + 42751 0.66 0.38086
Target:  5'- uGGUCCGguuguagcgGGGuCCCgUGCGCCagggcgUCCUGUa -3'
miRNA:   3'- gCCGGGCa--------CCC-GGG-ACGCGG------GGGACA- -5'
5666 5' -68.2 NC_001806.1 + 27861 0.66 0.38086
Target:  5'- -cGCCCcgcgGUGGG-CCUGCcUCCCCUGg -3'
miRNA:   3'- gcCGGG----CACCCgGGACGcGGGGGACa -5'
5666 5' -68.2 NC_001806.1 + 87249 0.66 0.38086
Target:  5'- cCGGaa-GUGGGgucaaggaCCCUG-GCCCCCUGg -3'
miRNA:   3'- -GCCgggCACCC--------GGGACgCGGGGGACa -5'
5666 5' -68.2 NC_001806.1 + 5676 0.66 0.38086
Target:  5'- gGGCggGUGGGUCC-GCGCCCCg--- -3'
miRNA:   3'- gCCGggCACCCGGGaCGCGGGGgaca -5'
5666 5' -68.2 NC_001806.1 + 96507 0.66 0.373255
Target:  5'- gCGGCgaaCGgGGGCCCUGCcacuccggcgccGCccgCCCCUGg -3'
miRNA:   3'- -GCCGg--GCaCCCGGGACG------------CG---GGGGACa -5'
5666 5' -68.2 NC_001806.1 + 2424 0.66 0.373255
Target:  5'- gGGCCCGaggcgcgcaggGGGCCaaagagGCgGCCCCCg-- -3'
miRNA:   3'- gCCGGGCa----------CCCGGga----CG-CGGGGGaca -5'
5666 5' -68.2 NC_001806.1 + 24634 0.66 0.373255
Target:  5'- gGGCCUG-GGcgcGCCgCUGCGgCCCgUGUa -3'
miRNA:   3'- gCCGGGCaCC---CGG-GACGCgGGGgACA- -5'
5666 5' -68.2 NC_001806.1 + 121430 0.66 0.365754
Target:  5'- gGGCCCGgGGGCCUggugGCaCCUCCc-- -3'
miRNA:   3'- gCCGGGCaCCCGGGa---CGcGGGGGaca -5'
5666 5' -68.2 NC_001806.1 + 17198 0.66 0.365754
Target:  5'- uGGaCCGUaGGGCCCUuaaauuuuuagaGCaGCCCCCg-- -3'
miRNA:   3'- gCCgGGCA-CCCGGGA------------CG-CGGGGGaca -5'
5666 5' -68.2 NC_001806.1 + 77533 0.66 0.365009
Target:  5'- aGGCCCG-GGGCCCcuggugcUGCGCgaggCCaCCaGUa -3'
miRNA:   3'- gCCGGGCaCCCGGG-------ACGCG----GG-GGaCA- -5'
5666 5' -68.2 NC_001806.1 + 123238 0.66 0.358357
Target:  5'- -cGCCCacGcGGCCCUGCGCCgacgCCUGg -3'
miRNA:   3'- gcCGGGcaC-CCGGGACGCGGg---GGACa -5'
5666 5' -68.2 NC_001806.1 + 120857 0.66 0.358357
Target:  5'- gGGacCCCG-GcGGCCCcugGCGCCgCCUGg -3'
miRNA:   3'- gCC--GGGCaC-CCGGGa--CGCGGgGGACa -5'
5666 5' -68.2 NC_001806.1 + 106696 0.66 0.358357
Target:  5'- gGGCUCuucccGGGCCCccggGCgGCCCCCgGUa -3'
miRNA:   3'- gCCGGGca---CCCGGGa---CG-CGGGGGaCA- -5'
5666 5' -68.2 NC_001806.1 + 2944 0.66 0.357623
Target:  5'- gCGGCCgGgccGGGCCgggacucuugcgcUUGCGCCCCUc-- -3'
miRNA:   3'- -GCCGGgCa--CCCGG-------------GACGCGGGGGaca -5'
5666 5' -68.2 NC_001806.1 + 69102 0.66 0.351066
Target:  5'- -aGCCCGcgcucGGCCUgUGCGCCCCCgGg -3'
miRNA:   3'- gcCGGGCac---CCGGG-ACGCGGGGGaCa -5'
5666 5' -68.2 NC_001806.1 + 23425 0.66 0.351066
Target:  5'- -cGCCCccgGGGCCCgagccCGCCCCCg-- -3'
miRNA:   3'- gcCGGGca-CCCGGGac---GCGGGGGaca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.