miRNA display CGI


Results 1 - 20 of 148 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5703 3' -55.9 NC_001806.1 + 100778 0.66 0.930623
Target:  5'- cUCGgcGGCCAgucgccGCGCCCcucgcgagacGCCGGCGACa -3'
miRNA:   3'- -AGC--UCGGU------UGCGGGac--------UGGUUGCUGc -5'
5703 3' -55.9 NC_001806.1 + 5819 0.66 0.930623
Target:  5'- aCGAGCCccgcGCGCCCguUGGCCGucccCGGg- -3'
miRNA:   3'- aGCUCGGu---UGCGGG--ACUGGUu---GCUgc -5'
5703 3' -55.9 NC_001806.1 + 56303 0.66 0.930623
Target:  5'- -gGAGCCccaGCaCCUGcGCCAACGAa- -3'
miRNA:   3'- agCUCGGuugCG-GGAC-UGGUUGCUgc -5'
5703 3' -55.9 NC_001806.1 + 132890 0.66 0.930623
Target:  5'- uUCGcGCCcagcuccuGGCgGCCCUGGCCGACcuCGg -3'
miRNA:   3'- -AGCuCGG--------UUG-CGGGACUGGUUGcuGC- -5'
5703 3' -55.9 NC_001806.1 + 134955 0.66 0.93011
Target:  5'- gCG-GCCGAC-CCCUcaucgucGGCCGucGCGGCGg -3'
miRNA:   3'- aGCuCGGUUGcGGGA-------CUGGU--UGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 150879 0.66 0.928558
Target:  5'- gCGGGCCAGgGCCCgggcacgGGCCucgggccccaggcACGGCc -3'
miRNA:   3'- aGCUCGGUUgCGGGa------CUGGu------------UGCUGc -5'
5703 3' -55.9 NC_001806.1 + 118830 0.66 0.925391
Target:  5'- cUCGGGCUcAUGCC---ACCGGCGACu -3'
miRNA:   3'- -AGCUCGGuUGCGGgacUGGUUGCUGc -5'
5703 3' -55.9 NC_001806.1 + 69430 0.66 0.925391
Target:  5'- cCGcGCgGACGCCCaccGGCCAcggacuCGGCGa -3'
miRNA:   3'- aGCuCGgUUGCGGGa--CUGGUu-----GCUGC- -5'
5703 3' -55.9 NC_001806.1 + 93492 0.66 0.925391
Target:  5'- aCGAgGCCGAgGCCCUagucaGCCAAcuCGGCa -3'
miRNA:   3'- aGCU-CGGUUgCGGGAc----UGGUU--GCUGc -5'
5703 3' -55.9 NC_001806.1 + 5867 0.66 0.925391
Target:  5'- ---cGCCgGACGCCggGACCAACggGACGg -3'
miRNA:   3'- agcuCGG-UUGCGGgaCUGGUUG--CUGC- -5'
5703 3' -55.9 NC_001806.1 + 64954 0.66 0.925391
Target:  5'- cCGGcGUCGGCGCCCgGGCCGGgGGu- -3'
miRNA:   3'- aGCU-CGGUUGCGGGaCUGGUUgCUgc -5'
5703 3' -55.9 NC_001806.1 + 21982 0.66 0.925391
Target:  5'- gUCGAGCUgGACGCCgacgcGACCucCGGCGc -3'
miRNA:   3'- -AGCUCGG-UUGCGGga---CUGGuuGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 23527 0.66 0.919922
Target:  5'- -aGGGCCccGACcCCCUGggcgGCUGGCGGCGg -3'
miRNA:   3'- agCUCGG--UUGcGGGAC----UGGUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 74580 0.66 0.919922
Target:  5'- cCG-GCgCGuCGCCCUaccCCGACGACGg -3'
miRNA:   3'- aGCuCG-GUuGCGGGAcu-GGUUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 21450 0.66 0.919922
Target:  5'- uUCGAGCCGACGacgaUGACgGggacgaguACGACGn -3'
miRNA:   3'- -AGCUCGGUUGCggg-ACUGgU--------UGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 21846 0.66 0.919922
Target:  5'- cCGAGgCcGCGCCCaaGCCccgGGCGGCGg -3'
miRNA:   3'- aGCUCgGuUGCGGGacUGG---UUGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 104329 0.66 0.919363
Target:  5'- uUCG-GCCAGCGCCUUGuagaagcGCguAUGGCu -3'
miRNA:   3'- -AGCuCGGUUGCGGGAC-------UGguUGCUGc -5'
5703 3' -55.9 NC_001806.1 + 18096 0.66 0.9148
Target:  5'- cCGGGCCGugGUCCgcaagaaacUGACCcucugaucgccguucGCGGCGa -3'
miRNA:   3'- aGCUCGGUugCGGG---------ACUGGu--------------UGCUGC- -5'
5703 3' -55.9 NC_001806.1 + 72511 0.66 0.914219
Target:  5'- gCGGGCCugggggaGCCCUGcguCGGCGugGg -3'
miRNA:   3'- aGCUCGGuug----CGGGACug-GUUGCugC- -5'
5703 3' -55.9 NC_001806.1 + 120945 0.66 0.914219
Target:  5'- -aGAGUCGACGaCCUgggGACgGACGuCGa -3'
miRNA:   3'- agCUCGGUUGC-GGGa--CUGgUUGCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.