miRNA display CGI


Results 1 - 20 of 203 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5704 5' -68.1 NC_001806.1 + 70143 0.66 0.397992
Target:  5'- --cCCUCCUCGaaccGGCCGC-CCGGGgCg -3'
miRNA:   3'- aaaGGGGGGGC----CCGGCGuGGCCCgGg -5'
5704 5' -68.1 NC_001806.1 + 22627 0.66 0.397992
Target:  5'- --gCCgCCgCaCCGGGCgaGCGCgCGGuGCCCg -3'
miRNA:   3'- aaaGG-GG-G-GGCCCGg-CGUG-GCC-CGGG- -5'
5704 5' -68.1 NC_001806.1 + 111477 0.66 0.397992
Target:  5'- -aUCCCCCgCCuuuuuGGGU----CCGGGCCCg -3'
miRNA:   3'- aaAGGGGG-GG-----CCCGgcguGGCCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 120834 0.66 0.397992
Target:  5'- --cCCgCCCCCGGcauGgCGCAgCUGGGaCCCc -3'
miRNA:   3'- aaaGG-GGGGGCC---CgGCGU-GGCCC-GGG- -5'
5704 5' -68.1 NC_001806.1 + 79484 0.66 0.397992
Target:  5'- ---gCCCCCUGGGCCGgCAgUcacGGCUCg -3'
miRNA:   3'- aaagGGGGGGCCCGGC-GUgGc--CCGGG- -5'
5704 5' -68.1 NC_001806.1 + 26675 0.66 0.397992
Target:  5'- ---gCCCCCCGgccccGGCCccCACCgcccggcguGGGCCCg -3'
miRNA:   3'- aaagGGGGGGC-----CCGGc-GUGG---------CCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 129864 0.66 0.397992
Target:  5'- --cCCCCCUCGGGgaCGUgACCacgugGGGCCa -3'
miRNA:   3'- aaaGGGGGGGCCCg-GCG-UGG-----CCCGGg -5'
5704 5' -68.1 NC_001806.1 + 43283 0.66 0.397205
Target:  5'- gUUCCgCCCUCGGaggcggaGCCGCGgCUGcaggaGGCCCu -3'
miRNA:   3'- aAAGG-GGGGGCC-------CGGCGU-GGC-----CCGGG- -5'
5704 5' -68.1 NC_001806.1 + 148437 0.66 0.390167
Target:  5'- --gCCCCCCCaGGGUCagGUACCgcgGGGCgaaCCg -3'
miRNA:   3'- aaaGGGGGGG-CCCGG--CGUGG---CCCG---GG- -5'
5704 5' -68.1 NC_001806.1 + 125501 0.66 0.390167
Target:  5'- -----gCCCCGGGCCGCgucGCCGGcacuuucugacGCCUc -3'
miRNA:   3'- aaagggGGGGCCCGGCG---UGGCC-----------CGGG- -5'
5704 5' -68.1 NC_001806.1 + 120789 0.66 0.390167
Target:  5'- -cUCCUCCCCGcGCCGUu---GGCCCc -3'
miRNA:   3'- aaAGGGGGGGCcCGGCGuggcCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 107462 0.66 0.390167
Target:  5'- --gCCgaCCUCCGGaCCGCGCUGG-CCCg -3'
miRNA:   3'- aaaGG--GGGGGCCcGGCGUGGCCcGGG- -5'
5704 5' -68.1 NC_001806.1 + 22074 0.66 0.38939
Target:  5'- --cCCgCCCCCGGggcggguGCUGUACgGcGGCCUg -3'
miRNA:   3'- aaaGG-GGGGGCC-------CGGCGUGgC-CCGGG- -5'
5704 5' -68.1 NC_001806.1 + 122159 0.66 0.387839
Target:  5'- gUUUCCCCuuuaacgugguccaCUCGGGCCGaACCGaaccaGCCCc -3'
miRNA:   3'- -AAAGGGG--------------GGGCCCGGCgUGGCc----CGGG- -5'
5704 5' -68.1 NC_001806.1 + 130077 0.66 0.382443
Target:  5'- -----gCUCCGGGgCGCGCuCGGaGCCCg -3'
miRNA:   3'- aaagggGGGGCCCgGCGUG-GCC-CGGG- -5'
5704 5' -68.1 NC_001806.1 + 37778 0.66 0.382443
Target:  5'- cUUUCgCUCCgGGGCCgggGCGCgGgGGUCCg -3'
miRNA:   3'- -AAAGgGGGGgCCCGG---CGUGgC-CCGGG- -5'
5704 5' -68.1 NC_001806.1 + 92883 0.66 0.382443
Target:  5'- -gUCCCCCCagcgugcaGGCUGCGgCCGcguGGUCCg -3'
miRNA:   3'- aaAGGGGGGgc------CCGGCGU-GGC---CCGGG- -5'
5704 5' -68.1 NC_001806.1 + 126320 0.66 0.382443
Target:  5'- ---aCCCCCCuGGCCuuuuacgagGUcaaauGCCGGGCCa -3'
miRNA:   3'- aaagGGGGGGcCCGG---------CG-----UGGCCCGGg -5'
5704 5' -68.1 NC_001806.1 + 106177 0.66 0.382443
Target:  5'- -cUCCCCCCUcGGUCGCcCCccuuaaGGGUCUc -3'
miRNA:   3'- aaAGGGGGGGcCCGGCGuGG------CCCGGG- -5'
5704 5' -68.1 NC_001806.1 + 23398 0.66 0.377858
Target:  5'- --cCCUCCCCGcGcCCGCGcCCcccuccacgcccccgGGGCCCg -3'
miRNA:   3'- aaaGGGGGGGCcC-GGCGU-GG---------------CCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.