miRNA display CGI


Results 1 - 20 of 119 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5717 3' -55.7 NC_001806.1 + 52861 0.66 0.922911
Target:  5'- -cGGGACCcgACag-GCGACCGCCGGcgGCg -3'
miRNA:   3'- guCCUUGG--UGggaUGCUGGUGGUC--UG- -5'
5717 3' -55.7 NC_001806.1 + 141535 0.66 0.922911
Target:  5'- aCAGGAcGCCGuCCC-GCGcCCAcuuuuCCAGGCa -3'
miRNA:   3'- -GUCCU-UGGU-GGGaUGCuGGU-----GGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 105509 0.66 0.922911
Target:  5'- aAGGAAcCCGCgCUAUGACgGCaauaaaaAGACa -3'
miRNA:   3'- gUCCUU-GGUGgGAUGCUGgUGg------UCUG- -5'
5717 3' -55.7 NC_001806.1 + 2993 0.66 0.922911
Target:  5'- gGGGAGgCGgCg-GCGGCCGCCAGcGCg -3'
miRNA:   3'- gUCCUUgGUgGgaUGCUGGUGGUC-UG- -5'
5717 3' -55.7 NC_001806.1 + 51605 0.66 0.922911
Target:  5'- -uGGAGCUGCCCgGCGGCCAgUuGAg -3'
miRNA:   3'- guCCUUGGUGGGaUGCUGGUgGuCUg -5'
5717 3' -55.7 NC_001806.1 + 74928 0.66 0.921803
Target:  5'- uCGGGGGgCGCCCccugagguuacgGCGGCgCugCGGGCg -3'
miRNA:   3'- -GUCCUUgGUGGGa-----------UGCUG-GugGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 80074 0.66 0.917274
Target:  5'- gCGGGAAucccucccuUCACCCUGgGACCccGCC-GACc -3'
miRNA:   3'- -GUCCUU---------GGUGGGAUgCUGG--UGGuCUG- -5'
5717 3' -55.7 NC_001806.1 + 32967 0.66 0.917274
Target:  5'- -cGGGGCC-CCUUGgGuCCGCCGGGg -3'
miRNA:   3'- guCCUUGGuGGGAUgCuGGUGGUCUg -5'
5717 3' -55.7 NC_001806.1 + 96113 0.66 0.917274
Target:  5'- gGGGAgcucgaguugcGCCGCCCggacUGCaGCCGCCcGACc -3'
miRNA:   3'- gUCCU-----------UGGUGGG----AUGcUGGUGGuCUG- -5'
5717 3' -55.7 NC_001806.1 + 28532 0.66 0.917274
Target:  5'- -cGGggUCGCCgUGgGACCcCCuGACu -3'
miRNA:   3'- guCCuuGGUGGgAUgCUGGuGGuCUG- -5'
5717 3' -55.7 NC_001806.1 + 60023 0.66 0.917274
Target:  5'- -cGGAGCCGCgCUGcCGuCCGCCGcGCc -3'
miRNA:   3'- guCCUUGGUGgGAU-GCuGGUGGUcUG- -5'
5717 3' -55.7 NC_001806.1 + 105141 0.66 0.917274
Target:  5'- uCGGGGGCgGCCgUGCcGCC-CCAGGg -3'
miRNA:   3'- -GUCCUUGgUGGgAUGcUGGuGGUCUg -5'
5717 3' -55.7 NC_001806.1 + 46234 0.66 0.914952
Target:  5'- -cGGAgACCACCCgcggcaggaaauCGGCCcaGCCAGAa -3'
miRNA:   3'- guCCU-UGGUGGGau----------GCUGG--UGGUCUg -5'
5717 3' -55.7 NC_001806.1 + 73081 0.66 0.913777
Target:  5'- -cGGAGCCuguccucgccucggcACCCccCGACCcgGCCGGGCc -3'
miRNA:   3'- guCCUUGG---------------UGGGauGCUGG--UGGUCUG- -5'
5717 3' -55.7 NC_001806.1 + 27855 0.66 0.911397
Target:  5'- -cGGGGCCGCCCcGCGguggGCCugCcuccccugGGACg -3'
miRNA:   3'- guCCUUGGUGGGaUGC----UGGugG--------UCUG- -5'
5717 3' -55.7 NC_001806.1 + 28678 0.66 0.907757
Target:  5'- gAGGAGCCGCCCgccauauuugggggACG-CCGugGGACc -3'
miRNA:   3'- gUCCUUGGUGGGa-------------UGCuGGUggUCUG- -5'
5717 3' -55.7 NC_001806.1 + 28426 0.66 0.907757
Target:  5'- aCAGGGACCggggucGCCCUGuugggggucgccaugUGACCcCCuGACu -3'
miRNA:   3'- -GUCCUUGG------UGGGAU---------------GCUGGuGGuCUG- -5'
5717 3' -55.7 NC_001806.1 + 57098 0.66 0.905282
Target:  5'- aAGG-GCCGCUCcacCGGCCGCCAGu- -3'
miRNA:   3'- gUCCuUGGUGGGau-GCUGGUGGUCug -5'
5717 3' -55.7 NC_001806.1 + 3980 0.66 0.905282
Target:  5'- -uGGAGCCACCCca-GGCCuccgcguCCGGGg -3'
miRNA:   3'- guCCUUGGUGGGaugCUGGu------GGUCUg -5'
5717 3' -55.7 NC_001806.1 + 136676 0.66 0.905282
Target:  5'- cCGGcGAACCAgCCgUugGGgCugCAGACc -3'
miRNA:   3'- -GUC-CUUGGU-GGgAugCUgGugGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.