miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5746 5' -53.7 NC_001806.1 + 98719 0.66 0.967305
Target:  5'- gUCC-UGGCCGGccuGGCGGCGgCCUucuucGCCu -3'
miRNA:   3'- gAGGaACUGGUC---UUGUUGCgGGA-----CGG- -5'
5746 5' -53.7 NC_001806.1 + 52149 0.66 0.967305
Target:  5'- gUCCUgGGCCAccuGAC-GCGCCUaGCCa -3'
miRNA:   3'- gAGGAaCUGGUc--UUGuUGCGGGaCGG- -5'
5746 5' -53.7 NC_001806.1 + 78781 0.66 0.967305
Target:  5'- gCUCgcgGGCCGGAcgccgccuugcGCGAUGCCgUGUCg -3'
miRNA:   3'- -GAGgaaCUGGUCU-----------UGUUGCGGgACGG- -5'
5746 5' -53.7 NC_001806.1 + 86160 0.66 0.967305
Target:  5'- gUCCUUGAUggaCGGGACcuGCGCgCggcggGCCa -3'
miRNA:   3'- gAGGAACUG---GUCUUGu-UGCGgGa----CGG- -5'
5746 5' -53.7 NC_001806.1 + 87116 0.66 0.967305
Target:  5'- gUCCUUGcccgccuCCAGGu--GCGCCaCUGCg -3'
miRNA:   3'- gAGGAACu------GGUCUuguUGCGG-GACGg -5'
5746 5' -53.7 NC_001806.1 + 89272 0.66 0.966988
Target:  5'- gCUCCgcgagGGCCGGcgggcGCAAaaaacccggacgcCGCCCUGgCCg -3'
miRNA:   3'- -GAGGaa---CUGGUCu----UGUU-------------GCGGGAC-GG- -5'
5746 5' -53.7 NC_001806.1 + 113132 0.66 0.964034
Target:  5'- gUUUUUGaacGCCugGGGGCAGCGCCUgGCCc -3'
miRNA:   3'- gAGGAAC---UGG--UCUUGUUGCGGGaCGG- -5'
5746 5' -53.7 NC_001806.1 + 30626 0.66 0.964034
Target:  5'- cCUCCgacucagGGCCGGGGgGGCGCg--GCCa -3'
miRNA:   3'- -GAGGaa-----CUGGUCUUgUUGCGggaCGG- -5'
5746 5' -53.7 NC_001806.1 + 98441 0.66 0.960542
Target:  5'- -gCCacgaGAUCaAGGACAGCGgCCUGCUg -3'
miRNA:   3'- gaGGaa--CUGG-UCUUGUUGCgGGACGG- -5'
5746 5' -53.7 NC_001806.1 + 21267 0.66 0.960542
Target:  5'- -cCCacGACCucGACGACGCCCgGCg -3'
miRNA:   3'- gaGGaaCUGGucUUGUUGCGGGaCGg -5'
5746 5' -53.7 NC_001806.1 + 138653 0.66 0.960542
Target:  5'- uCUCCUUuuacaACUuucuGCAGCGCCCggGCCu -3'
miRNA:   3'- -GAGGAAc----UGGucu-UGUUGCGGGa-CGG- -5'
5746 5' -53.7 NC_001806.1 + 21891 0.66 0.960542
Target:  5'- cCUCCgcgGGCCGcaucGAGCGcCGCCggGCCc -3'
miRNA:   3'- -GAGGaa-CUGGU----CUUGUuGCGGgaCGG- -5'
5746 5' -53.7 NC_001806.1 + 4433 0.66 0.960542
Target:  5'- -gCCcgGGCgGGGGCGGCGUCC-GCCc -3'
miRNA:   3'- gaGGaaCUGgUCUUGUUGCGGGaCGG- -5'
5746 5' -53.7 NC_001806.1 + 56280 0.66 0.95287
Target:  5'- gUCCUuccUGugCAG-GCGACGCCggaGCCc -3'
miRNA:   3'- gAGGA---ACugGUCuUGUUGCGGga-CGG- -5'
5746 5' -53.7 NC_001806.1 + 131460 0.66 0.95287
Target:  5'- gUCCgcgGACCG--GCGGCGCUgUUGCCg -3'
miRNA:   3'- gAGGaa-CUGGUcuUGUUGCGG-GACGG- -5'
5746 5' -53.7 NC_001806.1 + 85893 0.67 0.948682
Target:  5'- gUCCgUGuuCAGGGCGACGCCgUGg- -3'
miRNA:   3'- gAGGaACugGUCUUGUUGCGGgACgg -5'
5746 5' -53.7 NC_001806.1 + 111765 0.67 0.948682
Target:  5'- -gCCUguacGACgCgAGuuCGACGCCCUGCUg -3'
miRNA:   3'- gaGGAa---CUG-G-UCuuGUUGCGGGACGG- -5'
5746 5' -53.7 NC_001806.1 + 50449 0.67 0.948682
Target:  5'- -gCCUuugcggacgUGGCgCGGGAgGagcuguuucGCGCCCUGCCc -3'
miRNA:   3'- gaGGA---------ACUG-GUCUUgU---------UGCGGGACGG- -5'
5746 5' -53.7 NC_001806.1 + 36186 0.67 0.948682
Target:  5'- -aUCUUGACgCGu--CGAUGCUCUGCCg -3'
miRNA:   3'- gaGGAACUG-GUcuuGUUGCGGGACGG- -5'
5746 5' -53.7 NC_001806.1 + 105697 0.67 0.94825
Target:  5'- -cCCagGGCUcgcagccaacgucGGGGCGGCaaGCCCUGCCa -3'
miRNA:   3'- gaGGaaCUGG-------------UCUUGUUG--CGGGACGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.