miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5794 5' -58.5 NC_001806.1 + 123014 0.66 0.856551
Target:  5'- uGGuGAGGcc--CGCCGACGCCUCg--- -3'
miRNA:   3'- -CC-CUCCuacaGCGGCUGCGGGGaacc -5'
5794 5' -58.5 NC_001806.1 + 22605 0.66 0.856551
Target:  5'- -cGAGGggGUCGCCGccguCGCCgCCg--- -3'
miRNA:   3'- ccCUCCuaCAGCGGCu---GCGG-GGaacc -5'
5794 5' -58.5 NC_001806.1 + 22145 0.66 0.854294
Target:  5'- cGGAGGAggcgcGaCGCCGguucgaggccucggGCGCCCCggcggccgugUGGg -3'
miRNA:   3'- cCCUCCUa----CaGCGGC--------------UGCGGGGa---------ACC- -5'
5794 5' -58.5 NC_001806.1 + 4143 0.66 0.85202
Target:  5'- cGGGcGGcUGUCGCCcaGGCcgccguacagcacccGCCCCggGGg -3'
miRNA:   3'- -CCCuCCuACAGCGG--CUG---------------CGGGGaaCC- -5'
5794 5' -58.5 NC_001806.1 + 138680 0.66 0.85202
Target:  5'- cGGGccuGGAUGcgacccagaggacccUCGCCuACGCCCgCaUGGa -3'
miRNA:   3'- -CCCu--CCUAC---------------AGCGGcUGCGGG-GaACC- -5'
5794 5' -58.5 NC_001806.1 + 70931 0.66 0.848962
Target:  5'- cGGAGcGcgccGUgGUCGugGCgCCCUUGGu -3'
miRNA:   3'- cCCUC-Cua--CAgCGGCugCG-GGGAACC- -5'
5794 5' -58.5 NC_001806.1 + 9136 0.66 0.848962
Target:  5'- aGGGAGGggG-CGUCGACaGCCUggaGGg -3'
miRNA:   3'- -CCCUCCuaCaGCGGCUG-CGGGgaaCC- -5'
5794 5' -58.5 NC_001806.1 + 19890 0.66 0.841188
Target:  5'- cGGuGGGuuucUGUCGUCGGagGCCCCcgGGg -3'
miRNA:   3'- cCCuCCU----ACAGCGGCUg-CGGGGaaCC- -5'
5794 5' -58.5 NC_001806.1 + 72518 0.66 0.841188
Target:  5'- uGGGGGAgcccugcGUCGgCGugGgCCCCcgGGa -3'
miRNA:   3'- cCCUCCUa------CAGCgGCugC-GGGGaaCC- -5'
5794 5' -58.5 NC_001806.1 + 135848 0.66 0.841188
Target:  5'- aGGGAGGGUacCGUCGACGgCCg--GGg -3'
miRNA:   3'- -CCCUCCUAcaGCGGCUGCgGGgaaCC- -5'
5794 5' -58.5 NC_001806.1 + 100780 0.66 0.825115
Target:  5'- cGGcGGccaGUCGCCG-CGCCCCUc-- -3'
miRNA:   3'- cCCuCCua-CAGCGGCuGCGGGGAacc -5'
5794 5' -58.5 NC_001806.1 + 126073 0.66 0.825115
Target:  5'- cGGGcGGGUGaacgaGCCGACGgCCCg--- -3'
miRNA:   3'- -CCCuCCUACag---CGGCUGCgGGGaacc -5'
5794 5' -58.5 NC_001806.1 + 3545 0.67 0.816828
Target:  5'- gGGGAGGcgGgcgCGgCGGacagcCGCCCCagGGc -3'
miRNA:   3'- -CCCUCCuaCa--GCgGCU-----GCGGGGaaCC- -5'
5794 5' -58.5 NC_001806.1 + 77391 0.67 0.799792
Target:  5'- cGGGcgcGGcgGccgCGCCcGCGCCCCUgcucgUGGa -3'
miRNA:   3'- -CCCu--CCuaCa--GCGGcUGCGGGGA-----ACC- -5'
5794 5' -58.5 NC_001806.1 + 36739 0.67 0.799792
Target:  5'- aGGGGGGAUG-CGCCcgGGCgggaaGCUCCUaagGGc -3'
miRNA:   3'- -CCCUCCUACaGCGG--CUG-----CGGGGAa--CC- -5'
5794 5' -58.5 NC_001806.1 + 6669 0.67 0.799792
Target:  5'- gGGGGGGAgcaUGUCGugGgCCCU-GGa -3'
miRNA:   3'- -CCCUCCUacaGCGGCugCgGGGAaCC- -5'
5794 5' -58.5 NC_001806.1 + 11397 0.67 0.799792
Target:  5'- aGGGAGGGcauuggcgugcgUGaCGaCCGGCGCCgggaUUUGGg -3'
miRNA:   3'- -CCCUCCU------------ACaGC-GGCUGCGGg---GAACC- -5'
5794 5' -58.5 NC_001806.1 + 2861 0.67 0.791057
Target:  5'- gGGGAGGggGgCGCgGGCGUCCgagccgGGg -3'
miRNA:   3'- -CCCUCCuaCaGCGgCUGCGGGgaa---CC- -5'
5794 5' -58.5 NC_001806.1 + 75062 0.67 0.790176
Target:  5'- uGGuGG-UGcugaagaaccuguUCGCCGACGCCCCa--- -3'
miRNA:   3'- cCCuCCuAC-------------AGCGGCUGCGGGGaacc -5'
5794 5' -58.5 NC_001806.1 + 148126 0.67 0.782189
Target:  5'- uGGGGGGcUG-CGUgaGACGCCCCg--- -3'
miRNA:   3'- -CCCUCCuACaGCGg-CUGCGGGGaacc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.