miRNA display CGI


Results 1 - 20 of 84 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
5835 5' -55.7 NC_001806.1 + 50645 0.66 0.926323
Target:  5'- cCCGGGCGUgcggggacgcgcaccGGCGCCGGGacgacgcGGCGGc--- -3'
miRNA:   3'- -GGCCUGUA---------------UCGCGGUCC-------CCGUUcaac -5'
5835 5' -55.7 NC_001806.1 + 134519 0.66 0.924704
Target:  5'- aCGGggugGCGUGGCuUCGGGGGCA-GUUc -3'
miRNA:   3'- gGCC----UGUAUCGcGGUCCCCGUuCAAc -5'
5835 5' -55.7 NC_001806.1 + 38225 0.66 0.924704
Target:  5'- gUCGGACGaGGCGUCuGGGuGCuGGGUa- -3'
miRNA:   3'- -GGCCUGUaUCGCGGuCCC-CG-UUCAac -5'
5835 5' -55.7 NC_001806.1 + 5468 0.66 0.924704
Target:  5'- cUCGGGCucauAUAGUcCCAGGGGCcGGcgGg -3'
miRNA:   3'- -GGCCUG----UAUCGcGGUCCCCGuUCaaC- -5'
5835 5' -55.7 NC_001806.1 + 150353 0.66 0.924704
Target:  5'- gCGGGCcaauGCGCgAGGGGCcguGUg- -3'
miRNA:   3'- gGCCUGuau-CGCGgUCCCCGuu-CAac -5'
5835 5' -55.7 NC_001806.1 + 15070 0.66 0.924704
Target:  5'- uUCGGGCGacuggucucggGGCGCgCGGGGGaguuGUUGg -3'
miRNA:   3'- -GGCCUGUa----------UCGCG-GUCCCCguu-CAAC- -5'
5835 5' -55.7 NC_001806.1 + 45959 0.66 0.924704
Target:  5'- aCaGACAcgcucGCGCCagAGGGGCGAGg-- -3'
miRNA:   3'- gGcCUGUau---CGCGG--UCCCCGUUCaac -5'
5835 5' -55.7 NC_001806.1 + 151043 0.66 0.921403
Target:  5'- cCCGGACGUGGggcgagaagcgcaccCGCgCGGGGGUcgcGGGg-- -3'
miRNA:   3'- -GGCCUGUAUC---------------GCG-GUCCCCG---UUCaac -5'
5835 5' -55.7 NC_001806.1 + 66561 0.66 0.919154
Target:  5'- uUCGGuu-UGGgGCCGGGGGCGu---- -3'
miRNA:   3'- -GGCCuguAUCgCGGUCCCCGUucaac -5'
5835 5' -55.7 NC_001806.1 + 113880 0.66 0.919154
Target:  5'- gCCGGgu-UAGCGCgGGGGGCc----- -3'
miRNA:   3'- -GGCCuguAUCGCGgUCCCCGuucaac -5'
5835 5' -55.7 NC_001806.1 + 78267 0.66 0.919154
Target:  5'- gCUGG-CAgacUGGCGCC-GcGGCAAGUUGu -3'
miRNA:   3'- -GGCCuGU---AUCGCGGuCcCCGUUCAAC- -5'
5835 5' -55.7 NC_001806.1 + 134287 0.66 0.919154
Target:  5'- gUGGcACAgaacAGgGCCgagagaacgGGGGGCGGGUUGu -3'
miRNA:   3'- gGCC-UGUa---UCgCGG---------UCCCCGUUCAAC- -5'
5835 5' -55.7 NC_001806.1 + 103468 0.66 0.919154
Target:  5'- aCCGG-CGUcuGGCGugggaaaacCCGGGGGCu-GUUGu -3'
miRNA:   3'- -GGCCuGUA--UCGC---------GGUCCCCGuuCAAC- -5'
5835 5' -55.7 NC_001806.1 + 129997 0.66 0.918586
Target:  5'- aCCGGACAUGGUGuCCGuguaccagucccuGGGaCGGGUg- -3'
miRNA:   3'- -GGCCUGUAUCGC-GGU-------------CCCcGUUCAac -5'
5835 5' -55.7 NC_001806.1 + 38157 0.66 0.913364
Target:  5'- gCCGGGCcccgaGGCGCgAccacacacuguGGGGCGcuGGUUGa -3'
miRNA:   3'- -GGCCUGua---UCGCGgU-----------CCCCGU--UCAAC- -5'
5835 5' -55.7 NC_001806.1 + 127749 0.66 0.907336
Target:  5'- cCCGGGCG-GGCuGCCGGGuGCGGGccugUGg -3'
miRNA:   3'- -GGCCUGUaUCG-CGGUCCcCGUUCa---AC- -5'
5835 5' -55.7 NC_001806.1 + 121409 0.66 0.907336
Target:  5'- gCCGGGCGcgugcuGCGCCuugggcccGGGGGCcuGGUg- -3'
miRNA:   3'- -GGCCUGUau----CGCGG--------UCCCCGu-UCAac -5'
5835 5' -55.7 NC_001806.1 + 80992 0.66 0.907336
Target:  5'- aCCGGuCGUAGCGCCcuGGcGGUAc---- -3'
miRNA:   3'- -GGCCuGUAUCGCGGu-CC-CCGUucaac -5'
5835 5' -55.7 NC_001806.1 + 120324 0.66 0.907336
Target:  5'- -gGGACGgGGCgGUCGGGGGCGgcgGGUc- -3'
miRNA:   3'- ggCCUGUaUCG-CGGUCCCCGU---UCAac -5'
5835 5' -55.7 NC_001806.1 + 77468 0.66 0.903606
Target:  5'- cCCGGccaagaggccgacccGCAgaugcuGCGCCGccGGGGCGAGg-- -3'
miRNA:   3'- -GGCC---------------UGUau----CGCGGU--CCCCGUUCaac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.