miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6112 3' -61.3 NC_001826.1 + 5816 0.66 0.628491
Target:  5'- aCCGGGGGU-GGCgUaucGGCUGCUUGCa -3'
miRNA:   3'- gGGUCCCCAgCCGgAc--UCGAUGGGUG- -5'
6112 3' -61.3 NC_001826.1 + 19543 0.66 0.618455
Target:  5'- gUCCAGGGGggCuGCCcGGGCUGCa-GCg -3'
miRNA:   3'- -GGGUCCCCa-GcCGGaCUCGAUGggUG- -5'
6112 3' -61.3 NC_001826.1 + 100796 0.66 0.609431
Target:  5'- aCCGGGGGacggGGCCccggagcgagggagcGGGCUGCCCg- -3'
miRNA:   3'- gGGUCCCCag--CCGGa--------------CUCGAUGGGug -5'
6112 3' -61.3 NC_001826.1 + 99797 0.66 0.609431
Target:  5'- aCCGGGGGacggGGCCccggagcgagggagcGGGCUGCCCg- -3'
miRNA:   3'- gGGUCCCCag--CCGGa--------------CUCGAUGGGug -5'
6112 3' -61.3 NC_001826.1 + 73250 0.66 0.608429
Target:  5'- cCCCGGGGGUguuggCGGCCgaccugauuagGAGC-ACCa-- -3'
miRNA:   3'- -GGGUCCCCA-----GCCGGa----------CUCGaUGGgug -5'
6112 3' -61.3 NC_001826.1 + 101681 0.67 0.559671
Target:  5'- gCCGGGGGUgUGGCCUuuGUgugccuguaaaccacACCCACa -3'
miRNA:   3'- gGGUCCCCA-GCCGGAcuCGa--------------UGGGUG- -5'
6112 3' -61.3 NC_001826.1 + 100995 0.67 0.54984
Target:  5'- aCCGGGGGgacggGGCCccggagcgagggagcGGGCUGCCCg- -3'
miRNA:   3'- gGGUCCCCag---CCGGa--------------CUCGAUGGGug -5'
6112 3' -61.3 NC_001826.1 + 118319 0.67 0.54886
Target:  5'- gCCCAGGGGUgGGggguagGGGCUggGCCCc- -3'
miRNA:   3'- -GGGUCCCCAgCCgga---CUCGA--UGGGug -5'
6112 3' -61.3 NC_001826.1 + 100638 0.67 0.539089
Target:  5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3'
miRNA:   3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5'
6112 3' -61.3 NC_001826.1 + 99938 0.67 0.539089
Target:  5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3'
miRNA:   3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5'
6112 3' -61.3 NC_001826.1 + 99639 0.67 0.539089
Target:  5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3'
miRNA:   3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5'
6112 3' -61.3 NC_001826.1 + 99539 0.67 0.539089
Target:  5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3'
miRNA:   3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5'
6112 3' -61.3 NC_001826.1 + 100238 0.67 0.539089
Target:  5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3'
miRNA:   3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5'
6112 3' -61.3 NC_001826.1 + 100738 0.67 0.539089
Target:  5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3'
miRNA:   3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5'
6112 3' -61.3 NC_001826.1 + 100538 0.67 0.539089
Target:  5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3'
miRNA:   3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5'
6112 3' -61.3 NC_001826.1 + 100438 0.67 0.539089
Target:  5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3'
miRNA:   3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5'
6112 3' -61.3 NC_001826.1 + 99739 0.67 0.539089
Target:  5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3'
miRNA:   3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5'
6112 3' -61.3 NC_001826.1 + 99838 0.67 0.539089
Target:  5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3'
miRNA:   3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5'
6112 3' -61.3 NC_001826.1 + 100338 0.67 0.539089
Target:  5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3'
miRNA:   3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5'
6112 3' -61.3 NC_001826.1 + 100138 0.67 0.539089
Target:  5'- gCCC-GGGGUgcggguccccCGGCCUGGGgaGCCgGu -3'
miRNA:   3'- -GGGuCCCCA----------GCCGGACUCgaUGGgUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.