miRNA display CGI


Results 1 - 20 of 388 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6344 5' -59.5 NC_001847.1 + 102184 0.66 0.753676
Target:  5'- -cGCCAAgUCgGCCaC-CGCGCugUCCGCg -3'
miRNA:   3'- caCGGUUgGGaUGG-GaGCGCG--AGGCG- -5'
6344 5' -59.5 NC_001847.1 + 33023 0.66 0.753676
Target:  5'- aGUGCCGccGCCCUcUCCgccgagcuggaCGCGCU-CGCg -3'
miRNA:   3'- -CACGGU--UGGGAuGGGa----------GCGCGAgGCG- -5'
6344 5' -59.5 NC_001847.1 + 88624 0.66 0.753676
Target:  5'- -cGCCGccGCCC--CCCgaGCGCUgCCGCu -3'
miRNA:   3'- caCGGU--UGGGauGGGagCGCGA-GGCG- -5'
6344 5' -59.5 NC_001847.1 + 8226 0.66 0.753676
Target:  5'- aGUGCgAGCCCUgggACCCgCGCcaGCUCUc- -3'
miRNA:   3'- -CACGgUUGGGA---UGGGaGCG--CGAGGcg -5'
6344 5' -59.5 NC_001847.1 + 109875 0.66 0.753676
Target:  5'- gGUGuUCAACgCCUACCUgacCGCGCUguaCCGg -3'
miRNA:   3'- -CAC-GGUUG-GGAUGGGa--GCGCGA---GGCg -5'
6344 5' -59.5 NC_001847.1 + 19082 0.66 0.753676
Target:  5'- -cGUCGGCCCcGCUUUCGCucccgcuuucGCUCuCGCu -3'
miRNA:   3'- caCGGUUGGGaUGGGAGCG----------CGAG-GCG- -5'
6344 5' -59.5 NC_001847.1 + 48704 0.66 0.753676
Target:  5'- cGUGC--ACgCUGCCCgcgcCGCGCagcgCCGCc -3'
miRNA:   3'- -CACGguUGgGAUGGGa---GCGCGa---GGCG- -5'
6344 5' -59.5 NC_001847.1 + 95527 0.66 0.753676
Target:  5'- -cGCCAGgCUUGcCCCUgGgGCUggggCCGCg -3'
miRNA:   3'- caCGGUUgGGAU-GGGAgCgCGA----GGCG- -5'
6344 5' -59.5 NC_001847.1 + 102315 0.66 0.753676
Target:  5'- -cGgCGGCCaCgcggGCCUcgCGCGCUCgCGCg -3'
miRNA:   3'- caCgGUUGG-Ga---UGGGa-GCGCGAG-GCG- -5'
6344 5' -59.5 NC_001847.1 + 129780 0.66 0.753676
Target:  5'- -cGCCGgaGCCUggGCCCggcCGCGC-CgCGCg -3'
miRNA:   3'- caCGGU--UGGGa-UGGGa--GCGCGaG-GCG- -5'
6344 5' -59.5 NC_001847.1 + 78869 0.66 0.753676
Target:  5'- -cGCgGugCgcGCCCUCGCGCagcCCGUa -3'
miRNA:   3'- caCGgUugGgaUGGGAGCGCGa--GGCG- -5'
6344 5' -59.5 NC_001847.1 + 111039 0.66 0.753676
Target:  5'- aGUGCgAGCCCUgggACCCgCGCcaGCUCUc- -3'
miRNA:   3'- -CACGgUUGGGA---UGGGaGCG--CGAGGcg -5'
6344 5' -59.5 NC_001847.1 + 15407 0.66 0.752728
Target:  5'- -gGCCGgguuucgGCUC-GCCCUCgGCGCcUCCGUu -3'
miRNA:   3'- caCGGU-------UGGGaUGGGAG-CGCG-AGGCG- -5'
6344 5' -59.5 NC_001847.1 + 38207 0.66 0.75178
Target:  5'- cUGCC-GCCCgcggagGCCCgggcCGCGCgccucuacgcggCCGCc -3'
miRNA:   3'- cACGGuUGGGa-----UGGGa---GCGCGa-----------GGCG- -5'
6344 5' -59.5 NC_001847.1 + 88810 0.66 0.747975
Target:  5'- -cGCCGACgCgGCCCgcgggcggccgugcUGCGCUCgGCg -3'
miRNA:   3'- caCGGUUGgGaUGGGa-------------GCGCGAGgCG- -5'
6344 5' -59.5 NC_001847.1 + 100963 0.66 0.744155
Target:  5'- cGUGCgcGCCCccgGCCCgcaGCGCcucagCCGCc -3'
miRNA:   3'- -CACGguUGGGa--UGGGag-CGCGa----GGCG- -5'
6344 5' -59.5 NC_001847.1 + 2990 0.66 0.744155
Target:  5'- -gGCCGGCgCUggaGCCgCgCGCGCUCCa- -3'
miRNA:   3'- caCGGUUGgGA---UGG-GaGCGCGAGGcg -5'
6344 5' -59.5 NC_001847.1 + 102489 0.66 0.744155
Target:  5'- -cGCCGGCgCCguccaCCUCGCcCUCCaGCu -3'
miRNA:   3'- caCGGUUG-GGaug--GGAGCGcGAGG-CG- -5'
6344 5' -59.5 NC_001847.1 + 62413 0.66 0.744155
Target:  5'- -cGCCGGCgCUguuGCCCgCGUGC-CUGCu -3'
miRNA:   3'- caCGGUUGgGA---UGGGaGCGCGaGGCG- -5'
6344 5' -59.5 NC_001847.1 + 28619 0.66 0.744155
Target:  5'- gGUGCC-GCCCgagGCgCUaGUGC-CCGCg -3'
miRNA:   3'- -CACGGuUGGGa--UGgGAgCGCGaGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.