miRNA display CGI


Results 1 - 20 of 689 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 3' -54.2 NC_001847.1 + 47641 0.66 0.938517
Target:  5'- gGCggGCACgugcaagcagccgcCGAGCACGGCCaaguuuacgaagcggGCGCg -3'
miRNA:   3'- aCGa-CGUGau------------GCUCGUGUUGGa--------------CGCG- -5'
6348 3' -54.2 NC_001847.1 + 17319 0.66 0.937528
Target:  5'- cGCgGCAC-ACGGccGCGUAGCCgGCGCc -3'
miRNA:   3'- aCGaCGUGaUGCU--CGUGUUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 86035 0.66 0.937528
Target:  5'- cUGCUGCGCUGguUGGGCGaGGCgCUGgGg -3'
miRNA:   3'- -ACGACGUGAU--GCUCGUgUUG-GACgCg -5'
6348 3' -54.2 NC_001847.1 + 95801 0.66 0.937528
Target:  5'- cGCUGgACUGCccaacaucgugGucCGCGACCaGCGCg -3'
miRNA:   3'- aCGACgUGAUG-----------CucGUGUUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 61938 0.66 0.937528
Target:  5'- cGCgucaGCgGCG-GCGCGGCCcGCGCg -3'
miRNA:   3'- aCGacg-UGaUGCuCGUGUUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 53028 0.66 0.937528
Target:  5'- cGCUGCGCgcuCGGGCcucgGCuccgAGCCUggccccGCGCu -3'
miRNA:   3'- aCGACGUGau-GCUCG----UG----UUGGA------CGCG- -5'
6348 3' -54.2 NC_001847.1 + 105970 0.66 0.937528
Target:  5'- gGCgGCGCgGCGGGCcGCcuCCaGCGCc -3'
miRNA:   3'- aCGaCGUGaUGCUCG-UGuuGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 8253 0.66 0.937528
Target:  5'- gGCaGCA--ACGAGCGguuCCUGCGUg -3'
miRNA:   3'- aCGaCGUgaUGCUCGUguuGGACGCG- -5'
6348 3' -54.2 NC_001847.1 + 71078 0.66 0.937528
Target:  5'- gGCgGCGCUcgGCcGGCGCGGCCagagGCGa -3'
miRNA:   3'- aCGaCGUGA--UGcUCGUGUUGGa---CGCg -5'
6348 3' -54.2 NC_001847.1 + 9599 0.66 0.937528
Target:  5'- aGCcGCAgCcGCGGGgACGACCguagcUGCGCc -3'
miRNA:   3'- aCGaCGU-GaUGCUCgUGUUGG-----ACGCG- -5'
6348 3' -54.2 NC_001847.1 + 28833 0.66 0.937528
Target:  5'- gUGgUGCgGCUGCuaGAacGCGCGGCC-GCGCg -3'
miRNA:   3'- -ACgACG-UGAUG--CU--CGUGUUGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 30200 0.66 0.937528
Target:  5'- cGgUGCGCgGCGcGCGCGccgaaGCC-GCGCg -3'
miRNA:   3'- aCgACGUGaUGCuCGUGU-----UGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 88909 0.66 0.937528
Target:  5'- gGCgGCuccCUugcGCGcGCGCGGCuCUGCGCc -3'
miRNA:   3'- aCGaCGu--GA---UGCuCGUGUUG-GACGCG- -5'
6348 3' -54.2 NC_001847.1 + 36966 0.66 0.937528
Target:  5'- gGCUGC-CUAgaggacUGGGCGCG-CCgcgGCGUg -3'
miRNA:   3'- aCGACGuGAU------GCUCGUGUuGGa--CGCG- -5'
6348 3' -54.2 NC_001847.1 + 117433 0.66 0.937528
Target:  5'- aGCcGCugUACGuGCACuGCg-GCGUg -3'
miRNA:   3'- aCGaCGugAUGCuCGUGuUGgaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 131650 0.66 0.937528
Target:  5'- aGCUcGCGCggcucaugUGCGAGCucuCGgcgcGCCgGCGCg -3'
miRNA:   3'- aCGA-CGUG--------AUGCUCGu--GU----UGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 3157 0.66 0.937528
Target:  5'- gGCgGCGCgGCGGGCcGCcuCCaGCGCc -3'
miRNA:   3'- aCGaCGUGaUGCUCG-UGuuGGaCGCG- -5'
6348 3' -54.2 NC_001847.1 + 58656 0.66 0.937528
Target:  5'- gGCUcccagGCGCUGCaGGCGCcgcuGCCguggaaGCGCg -3'
miRNA:   3'- aCGA-----CGUGAUGcUCGUGu---UGGa-----CGCG- -5'
6348 3' -54.2 NC_001847.1 + 88627 0.66 0.937528
Target:  5'- gUGCgcGCGC-ACGuGCGCGagaGCCUGCucaGCg -3'
miRNA:   3'- -ACGa-CGUGaUGCuCGUGU---UGGACG---CG- -5'
6348 3' -54.2 NC_001847.1 + 95307 0.66 0.937528
Target:  5'- gGCgccuccagGCGCgGCGccGGCAgGGCCgaagGCGCa -3'
miRNA:   3'- aCGa-------CGUGaUGC--UCGUgUUGGa---CGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.