miRNA display CGI


Results 1 - 20 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 5' -56.6 NC_001847.1 + 52629 0.66 0.88272
Target:  5'- cCGCGCGGAuCGccacguugccgaUGGCCGCCCg----- -3'
miRNA:   3'- cGCGCGUCU-GC------------ACUGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 6322 0.66 0.88272
Target:  5'- uGCGCGCGGccACGUacgcGGgUGCCCCg---- -3'
miRNA:   3'- -CGCGCGUC--UGCA----CUgGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 5678 0.66 0.88272
Target:  5'- cGCGCGCGG-CGgcGGCCGCCagcucaaguagCCgcUUGg -3'
miRNA:   3'- -CGCGCGUCuGCa-CUGGCGG-----------GGauAAC- -5'
6348 5' -56.6 NC_001847.1 + 32390 0.66 0.88272
Target:  5'- cGCGCGCAcGCGgcacGA-CGCCCCg---- -3'
miRNA:   3'- -CGCGCGUcUGCa---CUgGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 89066 0.66 0.88272
Target:  5'- gGCGCcugGCGGACGUGuuUGCCCa----- -3'
miRNA:   3'- -CGCG---CGUCUGCACugGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 75946 0.66 0.88272
Target:  5'- -gGCGCGGACGgcucgggcuacGACgGCCCCc---- -3'
miRNA:   3'- cgCGCGUCUGCa----------CUGgCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 80617 0.66 0.88272
Target:  5'- uGCGCcccCGGACGgccCCGCCCCa---- -3'
miRNA:   3'- -CGCGc--GUCUGCacuGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 58242 0.66 0.88272
Target:  5'- aGCG-GCGGcGCGcGACCGCCCUc---- -3'
miRNA:   3'- -CGCgCGUC-UGCaCUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 64703 0.66 0.88272
Target:  5'- aGUGCGuCAGGCGcgGcACCGCCaCCg---- -3'
miRNA:   3'- -CGCGC-GUCUGCa-C-UGGCGG-GGauaac -5'
6348 5' -56.6 NC_001847.1 + 76443 0.66 0.87561
Target:  5'- cGCGCGCGGACuuuuCCGCCgCg---- -3'
miRNA:   3'- -CGCGCGUCUGcacuGGCGGgGauaac -5'
6348 5' -56.6 NC_001847.1 + 74412 0.66 0.87561
Target:  5'- cGCGCGCGcGCG-GGCCGCCg------ -3'
miRNA:   3'- -CGCGCGUcUGCaCUGGCGGggauaac -5'
6348 5' -56.6 NC_001847.1 + 54561 0.66 0.87561
Target:  5'- gGCgGCGCGGAgGacGACgGCCCCg---- -3'
miRNA:   3'- -CG-CGCGUCUgCa-CUGgCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 99738 0.66 0.87561
Target:  5'- cGCuGCGCGGguGCGuUGGCCGgCCCg---- -3'
miRNA:   3'- -CG-CGCGUC--UGC-ACUGGCgGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 61269 0.66 0.87561
Target:  5'- gGCGCcgGCGGAacUGACgCGCCCCg---- -3'
miRNA:   3'- -CGCG--CGUCUgcACUG-GCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 36417 0.66 0.87561
Target:  5'- cGCGCGCAGACccugcGACgCGCgCCg---- -3'
miRNA:   3'- -CGCGCGUCUGca---CUG-GCGgGGauaac -5'
6348 5' -56.6 NC_001847.1 + 42924 0.66 0.87561
Target:  5'- aGCGCGCGcuGC-UGGCCGCCCa----- -3'
miRNA:   3'- -CGCGCGUc-UGcACUGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 85056 0.66 0.87561
Target:  5'- gGCGCgGCAGcCuUGGCCGCgCCCg---- -3'
miRNA:   3'- -CGCG-CGUCuGcACUGGCG-GGGauaac -5'
6348 5' -56.6 NC_001847.1 + 129243 0.66 0.87561
Target:  5'- cGgGCGCAcaaucugcgacGGCGcGGCCGCCCUg---- -3'
miRNA:   3'- -CgCGCGU-----------CUGCaCUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 56428 0.66 0.87561
Target:  5'- cGCGuCGCGGAa--GACCGCCCg----- -3'
miRNA:   3'- -CGC-GCGUCUgcaCUGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 59619 0.66 0.87561
Target:  5'- aGCGCaauGCAGACGccgcccgcGACCGCgCUCUuUUGa -3'
miRNA:   3'- -CGCG---CGUCUGCa-------CUGGCG-GGGAuAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.