miRNA display CGI


Results 41 - 60 of 211 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6348 5' -56.6 NC_001847.1 + 107512 0.67 0.820072
Target:  5'- aGCGCgagugccgaGCGGACGaggaacgaUGGCCGCgCCUAa-- -3'
miRNA:   3'- -CGCG---------CGUCUGC--------ACUGGCGgGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 106956 0.73 0.495549
Target:  5'- gGCGCGCAGGCGcgcGGCCGCCag-GUa- -3'
miRNA:   3'- -CGCGCGUCUGCa--CUGGCGGggaUAac -5'
6348 5' -56.6 NC_001847.1 + 106539 0.68 0.784417
Target:  5'- cCGCGUAGcGCGcGGCCGCCUCg---- -3'
miRNA:   3'- cGCGCGUC-UGCaCUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 105766 0.66 0.852995
Target:  5'- cGCGCGCGGcaGCuccGGCCGCCCg----- -3'
miRNA:   3'- -CGCGCGUC--UGca-CUGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 104883 0.67 0.836906
Target:  5'- cGCaGCGguGGCGgcGAgCGCCCCg---- -3'
miRNA:   3'- -CG-CGCguCUGCa-CUgGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 104560 0.67 0.802553
Target:  5'- cGCGCGCAGAgGUacuccACCGCgCCg---- -3'
miRNA:   3'- -CGCGCGUCUgCAc----UGGCGgGGauaac -5'
6348 5' -56.6 NC_001847.1 + 104454 0.67 0.811394
Target:  5'- gGCGCGCAGguacACGUGcGCCuGCCCg----- -3'
miRNA:   3'- -CGCGCGUC----UGCAC-UGG-CGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 104432 0.69 0.717101
Target:  5'- cCGCGCGGGCGUccaggagcgccgGGCUGCCCUc---- -3'
miRNA:   3'- cGCGCGUCUGCA------------CUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 104100 0.74 0.448629
Target:  5'- gGCgGCGCGGugGcUGGCCGCCUCg---- -3'
miRNA:   3'- -CG-CGCGUCugC-ACUGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 103462 0.75 0.362785
Target:  5'- -aGCGCAGACacGGCCGCCCUUAg-- -3'
miRNA:   3'- cgCGCGUCUGcaCUGGCGGGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 103004 0.7 0.646209
Target:  5'- cGUGCGCGGGCGcGGCgGCgCCCa---- -3'
miRNA:   3'- -CGCGCGUCUGCaCUGgCG-GGGauaac -5'
6348 5' -56.6 NC_001847.1 + 100521 0.68 0.765733
Target:  5'- gGCGCGCAGGCGccgGACUuCCUCg---- -3'
miRNA:   3'- -CGCGCGUCUGCa--CUGGcGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 99738 0.66 0.87561
Target:  5'- cGCuGCGCGGguGCGuUGGCCGgCCCg---- -3'
miRNA:   3'- -CG-CGCGUC--UGC-ACUGGCgGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 99694 0.68 0.746572
Target:  5'- gGCGCGCGGcGCG-GGCCGCCgUa---- -3'
miRNA:   3'- -CGCGCGUC-UGCaCUGGCGGgGauaac -5'
6348 5' -56.6 NC_001847.1 + 98625 0.66 0.852995
Target:  5'- uCGCGCAG-CGUGcacACCGCCgCUu--- -3'
miRNA:   3'- cGCGCGUCuGCAC---UGGCGGgGAuaac -5'
6348 5' -56.6 NC_001847.1 + 96045 0.66 0.860742
Target:  5'- uCGCGCAG-CGUG-UCGUCCCg---- -3'
miRNA:   3'- cGCGCGUCuGCACuGGCGGGGauaac -5'
6348 5' -56.6 NC_001847.1 + 96022 0.66 0.845047
Target:  5'- -aGCGCGGcGCGUcGGCCGCCgC-GUUGc -3'
miRNA:   3'- cgCGCGUC-UGCA-CUGGCGGgGaUAAC- -5'
6348 5' -56.6 NC_001847.1 + 93430 0.72 0.534624
Target:  5'- uGgGCGCAGACG-GACUGCgacCCCUAc-- -3'
miRNA:   3'- -CgCGCGUCUGCaCUGGCG---GGGAUaac -5'
6348 5' -56.6 NC_001847.1 + 92202 0.67 0.828579
Target:  5'- cGCGCGCGG-CGUcGGCCGCUUg----- -3'
miRNA:   3'- -CGCGCGUCuGCA-CUGGCGGGgauaac -5'
6348 5' -56.6 NC_001847.1 + 91046 0.66 0.845047
Target:  5'- uGCGCGCAGGCGgcgGGCgcagaCGCCgCa---- -3'
miRNA:   3'- -CGCGCGUCUGCa--CUG-----GCGGgGauaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.