miRNA display CGI


Results 41 - 60 of 879 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6350 5' -62.5 NC_001847.1 + 131261 0.66 0.59522
Target:  5'- --cGCcGC-GGCGCCgCGCgACgGGCCg -3'
miRNA:   3'- ccuCGuCGaCCGCGGaGCG-UGgCCGG- -5'
6350 5' -62.5 NC_001847.1 + 131231 0.74 0.210455
Target:  5'- cGGGCGcGCaaccGGCGCC-CGCGCUGGCUa -3'
miRNA:   3'- cCUCGU-CGa---CCGCGGaGCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 131161 0.71 0.337604
Target:  5'- -uGGCcgcGCUGGCGCugcucacggcccacCUCGCGCUGGCg -3'
miRNA:   3'- ccUCGu--CGACCGCG--------------GAGCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 131160 0.66 0.579533
Target:  5'- cGGGGCcGCgcgcccgggcccccGGCGcCCUCGCcGCCGGagaCg -3'
miRNA:   3'- -CCUCGuCGa-------------CCGC-GGAGCG-UGGCCg--G- -5'
6350 5' -62.5 NC_001847.1 + 131130 0.68 0.444908
Target:  5'- cGAGaGGCgGGCGCCggGC-CCGGCg -3'
miRNA:   3'- cCUCgUCGaCCGCGGagCGuGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 130908 0.68 0.471644
Target:  5'- gGGGGCGGC-GGUGcCCUCGgGgCCaggaccgaGGCCg -3'
miRNA:   3'- -CCUCGUCGaCCGC-GGAGCgU-GG--------CCGG- -5'
6350 5' -62.5 NC_001847.1 + 130898 0.78 0.110935
Target:  5'- -uGGCuGCUGGCGCagCUCGUGCCGGCg -3'
miRNA:   3'- ccUCGuCGACCGCG--GAGCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 130842 0.71 0.336872
Target:  5'- -aGGCGGCgcgcgaguaccaaGGCGCCggcgCGCGCCucguGGCCg -3'
miRNA:   3'- ccUCGUCGa------------CCGCGGa---GCGUGG----CCGG- -5'
6350 5' -62.5 NC_001847.1 + 130586 0.7 0.354754
Target:  5'- aGAGCAGCgaggacgacGGCGCCggagaCGCGggGGCCa -3'
miRNA:   3'- cCUCGUCGa--------CCGCGGa----GCGUggCCGG- -5'
6350 5' -62.5 NC_001847.1 + 130518 0.7 0.37016
Target:  5'- cGAGCgccGGCgGGcCGCC-CGCGCCGaGCUg -3'
miRNA:   3'- cCUCG---UCGaCC-GCGGaGCGUGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 130238 0.67 0.546526
Target:  5'- cGGcGCGGUcGGUGUCguUCGCAgCGGCg -3'
miRNA:   3'- -CCuCGUCGaCCGCGG--AGCGUgGCCGg -5'
6350 5' -62.5 NC_001847.1 + 130207 0.72 0.297741
Target:  5'- cGGGCGGCgcggagGGCGCgggaagCGCGgCGGCCc -3'
miRNA:   3'- cCUCGUCGa-----CCGCGga----GCGUgGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 129371 0.68 0.489913
Target:  5'- cGGGGCuAGaCgccGCGCUUCGCGuuGGCg -3'
miRNA:   3'- -CCUCG-UC-Gac-CGCGGAGCGUggCCGg -5'
6350 5' -62.5 NC_001847.1 + 129300 0.69 0.436186
Target:  5'- aGGGGCGGgcCUGGUGCaaggCGgGCCuGCCg -3'
miRNA:   3'- -CCUCGUC--GACCGCGga--GCgUGGcCGG- -5'
6350 5' -62.5 NC_001847.1 + 129024 0.76 0.161283
Target:  5'- -uGGCGGCgaGGCG-CUCGCGCCGcGCCu -3'
miRNA:   3'- ccUCGUCGa-CCGCgGAGCGUGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 128985 0.68 0.444908
Target:  5'- cGAGCAcCUGcGCGCCgucacCGcCACCGaGCCc -3'
miRNA:   3'- cCUCGUcGAC-CGCGGa----GC-GUGGC-CGG- -5'
6350 5' -62.5 NC_001847.1 + 128596 0.7 0.386016
Target:  5'- aGAaCAGgUcGCGcCCUCGCACCGGCg -3'
miRNA:   3'- cCUcGUCgAcCGC-GGAGCGUGGCCGg -5'
6350 5' -62.5 NC_001847.1 + 128376 1.13 0.00032
Target:  5'- cGGAGCAGCUGGCGCCUCGCACCGGCCg -3'
miRNA:   3'- -CCUCGUCGACCGCGGAGCGUGGCCGG- -5'
6350 5' -62.5 NC_001847.1 + 128181 0.66 0.614916
Target:  5'- cGGGCGGaa-GCGCCgccgcgacccCGCGCCuGGCCc -3'
miRNA:   3'- cCUCGUCgacCGCGGa---------GCGUGG-CCGG- -5'
6350 5' -62.5 NC_001847.1 + 128121 0.66 0.585407
Target:  5'- -uGGC-GCUGGCGCUggcggaUGCG-CGGCCg -3'
miRNA:   3'- ccUCGuCGACCGCGGa-----GCGUgGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.