miRNA display CGI


Results 1 - 20 of 192 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6352 5' -56 NC_001847.1 + 75787 0.66 0.897429
Target:  5'- cGCCgCUgccgccGCCGCuc-CGCCCCCg -3'
miRNA:   3'- aCGG-GAagaaa-CGGUGcaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 126667 0.66 0.897429
Target:  5'- cGCCCccg---GCCgaGCGc-CGCCCCCg -3'
miRNA:   3'- aCGGGaagaaaCGG--UGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 107214 0.66 0.897429
Target:  5'- gGCCCaggCgcUGuCCGCGUccuccgcgcccUcCGCCCCCu -3'
miRNA:   3'- aCGGGaa-GaaAC-GGUGCA-----------A-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 60655 0.66 0.897429
Target:  5'- gUGCgCgcg---GCCGCGUccgCGCCCUCg -3'
miRNA:   3'- -ACGgGaagaaaCGGUGCAa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 13113 0.66 0.897429
Target:  5'- cGUCCUccucggCUgcgGCCGCGaUCaGCaCCCCg -3'
miRNA:   3'- aCGGGAa-----GAaa-CGGUGCaAG-CG-GGGG- -5'
6352 5' -56 NC_001847.1 + 23854 0.66 0.897429
Target:  5'- cGCCCccg---GCCgaGCGc-CGCCCCCg -3'
miRNA:   3'- aCGGGaagaaaCGG--UGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 71284 0.66 0.897429
Target:  5'- aGCCg-UCgc-GCCAUG--CGCCCCCc -3'
miRNA:   3'- aCGGgaAGaaaCGGUGCaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 104656 0.66 0.897429
Target:  5'- cGCCCgagg--GCCGCGccgaUCGCgUCCCa -3'
miRNA:   3'- aCGGGaagaaaCGGUGCa---AGCG-GGGG- -5'
6352 5' -56 NC_001847.1 + 4401 0.66 0.897429
Target:  5'- gGCCCaggCgcUGuCCGCGUccuccgcgcccUcCGCCCCCu -3'
miRNA:   3'- aCGGGaa-GaaAC-GGUGCA-----------A-GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 75009 0.66 0.897429
Target:  5'- cGUUCUUCggcGCCGa---CGCCCCCu -3'
miRNA:   3'- aCGGGAAGaaaCGGUgcaaGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 83305 0.66 0.890757
Target:  5'- cGCCag-CUcgGCCACGUU-GCCCg- -3'
miRNA:   3'- aCGGgaaGAaaCGGUGCAAgCGGGgg -5'
6352 5' -56 NC_001847.1 + 84475 0.66 0.890757
Target:  5'- aGCCCgcag--GgCACG-UCGCCCuCCa -3'
miRNA:   3'- aCGGGaagaaaCgGUGCaAGCGGG-GG- -5'
6352 5' -56 NC_001847.1 + 120565 0.66 0.890757
Target:  5'- cGUCCUUagagaGCCGCG--CGCCCgCCa -3'
miRNA:   3'- aCGGGAAgaaa-CGGUGCaaGCGGG-GG- -5'
6352 5' -56 NC_001847.1 + 124291 0.66 0.890757
Target:  5'- cGCCCgccgcgcCUcgGCCACG--CGCCgCCg -3'
miRNA:   3'- aCGGGaa-----GAaaCGGUGCaaGCGGgGG- -5'
6352 5' -56 NC_001847.1 + 53994 0.66 0.890757
Target:  5'- cGCCCggc---GCCGCGUUgGCUCUa -3'
miRNA:   3'- aCGGGaagaaaCGGUGCAAgCGGGGg -5'
6352 5' -56 NC_001847.1 + 6878 0.66 0.883854
Target:  5'- cGCCUUgcgcUUUUGCauUugGcUCGCCCCUg -3'
miRNA:   3'- aCGGGAa---GAAACG--GugCaAGCGGGGG- -5'
6352 5' -56 NC_001847.1 + 80685 0.66 0.883854
Target:  5'- cGCCCUccuccUCgg-GCU-CGUcccCGCCCCCc -3'
miRNA:   3'- aCGGGA-----AGaaaCGGuGCAa--GCGGGGG- -5'
6352 5' -56 NC_001847.1 + 131192 0.66 0.883854
Target:  5'- cGCgCUggcgCUguggGUCGCGcUCGCCgCCCg -3'
miRNA:   3'- aCGgGAa---GAaa--CGGUGCaAGCGG-GGG- -5'
6352 5' -56 NC_001847.1 + 36422 0.66 0.883854
Target:  5'- gGCCCcggCUUcgGCCcCGgcuUCGgCCCCg -3'
miRNA:   3'- aCGGGaa-GAAa-CGGuGCa--AGCgGGGG- -5'
6352 5' -56 NC_001847.1 + 1093 0.66 0.883854
Target:  5'- cGCCUgugacUCUggagacGCCGCGU--GCCCCUg -3'
miRNA:   3'- aCGGGa----AGAaa----CGGUGCAagCGGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.