Results 1 - 20 of 188 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6354 | 3' | -52.4 | NC_001847.1 | + | 104829 | 0.66 | 0.978615 |
Target: 5'- cCGCCGGGGggGCGGGCg-------- -3' miRNA: 3'- aGCGGCCCUggCGCUCGaaauauaug -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 102531 | 0.66 | 0.978615 |
Target: 5'- gCGCCGGuGAUCGCGuccaGGCag---AUGCa -3' miRNA: 3'- aGCGGCC-CUGGCGC----UCGaaauaUAUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 28098 | 0.66 | 0.978615 |
Target: 5'- cUGcCCGGGGCCGCGcGCg-------- -3' miRNA: 3'- aGC-GGCCCUGGCGCuCGaaauauaug -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 101160 | 0.66 | 0.978615 |
Target: 5'- -gGCCGGGGCCG-GGGCc-------- -3' miRNA: 3'- agCGGCCCUGGCgCUCGaaauauaug -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 118899 | 0.66 | 0.978615 |
Target: 5'- -gGCCGGGGCCG-GGGCc-------- -3' miRNA: 3'- agCGGCCCUGGCgCUCGaaauauaug -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 79540 | 0.66 | 0.978615 |
Target: 5'- cCGUCGGGGCCGgGggGGCUggg---GCu -3' miRNA: 3'- aGCGGCCCUGGCgC--UCGAaauauaUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 81556 | 0.66 | 0.978138 |
Target: 5'- cUCGCCGGccCCGCGcAGCUgcgcgggGCc -3' miRNA: 3'- -AGCGGCCcuGGCGC-UCGAaauaua-UG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 70078 | 0.66 | 0.977653 |
Target: 5'- gCGCUGGGACUGCucGCggaggagGCg -3' miRNA: 3'- aGCGGCCCUGGCGcuCGaaauauaUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 3211 | 0.66 | 0.97716 |
Target: 5'- aUCGCCGGcgcacgugccuccgcGccGCCGCG-GCUUgcgGUACa -3' miRNA: 3'- -AGCGGCC---------------C--UGGCGCuCGAAauaUAUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 57689 | 0.66 | 0.97615 |
Target: 5'- gUGCUGGGcGCCGCGGGUg-------- -3' miRNA: 3'- aGCGGCCC-UGGCGCUCGaaauauaug -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 117472 | 0.66 | 0.97615 |
Target: 5'- gUGCCcggcGGACCGCGAGCcgccg--ACg -3' miRNA: 3'- aGCGGc---CCUGGCGCUCGaaauauaUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 21216 | 0.66 | 0.97615 |
Target: 5'- cCGCCGcGACCGCGcGCUg------- -3' miRNA: 3'- aGCGGCcCUGGCGCuCGAaauauaug -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 65964 | 0.66 | 0.97615 |
Target: 5'- cUCGCgCGGGACgugaCGCGcaagugcacGGCU--AUGUGCa -3' miRNA: 3'- -AGCG-GCCCUG----GCGC---------UCGAaaUAUAUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 39012 | 0.66 | 0.97615 |
Target: 5'- cUCGUCGcGGAgUGCG-GCUaaUAUAUGCu -3' miRNA: 3'- -AGCGGC-CCUgGCGCuCGAa-AUAUAUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 56603 | 0.66 | 0.97615 |
Target: 5'- gCGCCGGGACuCGCGucuuccGGCg-------- -3' miRNA: 3'- aGCGGCCCUG-GCGC------UCGaaauauaug -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 85251 | 0.66 | 0.97615 |
Target: 5'- gCGCCaGGugCGCGAGgUagGUGgccGCg -3' miRNA: 3'- aGCGGcCCugGCGCUCgAaaUAUa--UG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 122836 | 0.66 | 0.97615 |
Target: 5'- gCGCCcaccGGGcCCGCGcccuGGCUUgugGUGCu -3' miRNA: 3'- aGCGG----CCCuGGCGC----UCGAAauaUAUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 13388 | 0.66 | 0.97615 |
Target: 5'- aCGuCCGGGcgcGCCGCGGGCc-------- -3' miRNA: 3'- aGC-GGCCC---UGGCGCUCGaaauauaug -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 78287 | 0.66 | 0.975108 |
Target: 5'- gCGCCcGGGCCGCcGGGCgcagacgGCg -3' miRNA: 3'- aGCGGcCCUGGCG-CUCGaaauauaUG- -5' |
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6354 | 3' | -52.4 | NC_001847.1 | + | 57756 | 0.66 | 0.974575 |
Target: 5'- cCGCCGGG-CCaCGAGCgagagcggGCg -3' miRNA: 3'- aGCGGCCCuGGcGCUCGaaauaua-UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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