miRNA display CGI


Results 1 - 20 of 188 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 3' -52.4 NC_001847.1 + 118899 0.66 0.978615
Target:  5'- -gGCCGGGGCCG-GGGCc-------- -3'
miRNA:   3'- agCGGCCCUGGCgCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 102531 0.66 0.978615
Target:  5'- gCGCCGGuGAUCGCGuccaGGCag---AUGCa -3'
miRNA:   3'- aGCGGCC-CUGGCGC----UCGaaauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 101160 0.66 0.978615
Target:  5'- -gGCCGGGGCCG-GGGCc-------- -3'
miRNA:   3'- agCGGCCCUGGCgCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 28098 0.66 0.978615
Target:  5'- cUGcCCGGGGCCGCGcGCg-------- -3'
miRNA:   3'- aGC-GGCCCUGGCGCuCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 79540 0.66 0.978615
Target:  5'- cCGUCGGGGCCGgGggGGCUggg---GCu -3'
miRNA:   3'- aGCGGCCCUGGCgC--UCGAaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 104829 0.66 0.978615
Target:  5'- cCGCCGGGGggGCGGGCg-------- -3'
miRNA:   3'- aGCGGCCCUggCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 81556 0.66 0.978138
Target:  5'- cUCGCCGGccCCGCGcAGCUgcgcgggGCc -3'
miRNA:   3'- -AGCGGCCcuGGCGC-UCGAaauaua-UG- -5'
6354 3' -52.4 NC_001847.1 + 70078 0.66 0.977653
Target:  5'- gCGCUGGGACUGCucGCggaggagGCg -3'
miRNA:   3'- aGCGGCCCUGGCGcuCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 3211 0.66 0.97716
Target:  5'- aUCGCCGGcgcacgugccuccgcGccGCCGCG-GCUUgcgGUACa -3'
miRNA:   3'- -AGCGGCC---------------C--UGGCGCuCGAAauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 21216 0.66 0.97615
Target:  5'- cCGCCGcGACCGCGcGCUg------- -3'
miRNA:   3'- aGCGGCcCUGGCGCuCGAaauauaug -5'
6354 3' -52.4 NC_001847.1 + 117472 0.66 0.97615
Target:  5'- gUGCCcggcGGACCGCGAGCcgccg--ACg -3'
miRNA:   3'- aGCGGc---CCUGGCGCUCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 57689 0.66 0.97615
Target:  5'- gUGCUGGGcGCCGCGGGUg-------- -3'
miRNA:   3'- aGCGGCCC-UGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 85251 0.66 0.97615
Target:  5'- gCGCCaGGugCGCGAGgUagGUGgccGCg -3'
miRNA:   3'- aGCGGcCCugGCGCUCgAaaUAUa--UG- -5'
6354 3' -52.4 NC_001847.1 + 122836 0.66 0.97615
Target:  5'- gCGCCcaccGGGcCCGCGcccuGGCUUgugGUGCu -3'
miRNA:   3'- aGCGG----CCCuGGCGC----UCGAAauaUAUG- -5'
6354 3' -52.4 NC_001847.1 + 13388 0.66 0.97615
Target:  5'- aCGuCCGGGcgcGCCGCGGGCc-------- -3'
miRNA:   3'- aGC-GGCCC---UGGCGCUCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 56603 0.66 0.97615
Target:  5'- gCGCCGGGACuCGCGucuuccGGCg-------- -3'
miRNA:   3'- aGCGGCCCUG-GCGC------UCGaaauauaug -5'
6354 3' -52.4 NC_001847.1 + 39012 0.66 0.97615
Target:  5'- cUCGUCGcGGAgUGCG-GCUaaUAUAUGCu -3'
miRNA:   3'- -AGCGGC-CCUgGCGCuCGAa-AUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 65964 0.66 0.97615
Target:  5'- cUCGCgCGGGACgugaCGCGcaagugcacGGCU--AUGUGCa -3'
miRNA:   3'- -AGCG-GCCCUG----GCGC---------UCGAaaUAUAUG- -5'
6354 3' -52.4 NC_001847.1 + 78287 0.66 0.975108
Target:  5'- gCGCCcGGGCCGCcGGGCgcagacgGCg -3'
miRNA:   3'- aGCGGcCCUGGCG-CUCGaaauauaUG- -5'
6354 3' -52.4 NC_001847.1 + 57756 0.66 0.974575
Target:  5'- cCGCCGGG-CCaCGAGCgagagcggGCg -3'
miRNA:   3'- aGCGGCCCuGGcGCUCGaaauaua-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.