miRNA display CGI


Results 61 - 80 of 339 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6354 5' -55.7 NC_001847.1 + 107642 0.69 0.762369
Target:  5'- gCCGCGGCG--GCGGcCGA--GGCCUCu -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUUagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 106712 0.66 0.887336
Target:  5'- gCCGCGGCGUagccagcGCGGgcgcCGGUUGcGCgCCCg -3'
miRNA:   3'- -GGCGUCGCAa------CGCCa---GUUAGU-CG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 106667 0.68 0.834068
Target:  5'- gCCGCGGCGUccgcgGCGcGUCGugccacggCGGCCa- -3'
miRNA:   3'- -GGCGUCGCAa----CGC-CAGUua------GUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 105440 0.66 0.912924
Target:  5'- gCCGCAGUcucGCGcccaagCGAUCAGCgCCa -3'
miRNA:   3'- -GGCGUCGcaaCGCca----GUUAGUCGgGG- -5'
6354 5' -55.7 NC_001847.1 + 105105 0.66 0.894081
Target:  5'- uCgGCGGCGgggccgccggGCGG-C-AUgGGCCCCa -3'
miRNA:   3'- -GgCGUCGCaa--------CGCCaGuUAgUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 105045 0.66 0.906878
Target:  5'- gCCGCGGCGcugggcGCGGgCGuguggUAGUCCCc -3'
miRNA:   3'- -GGCGUCGCaa----CGCCaGUua---GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 104881 0.79 0.279499
Target:  5'- gCCGCAGCGgugGCGG-CGAgc-GCCCCg -3'
miRNA:   3'- -GGCGUCGCaa-CGCCaGUUaguCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 104739 0.75 0.454148
Target:  5'- gCCGCGGCGcgGCGGcCAcUCgGGCCgCCg -3'
miRNA:   3'- -GGCGUCGCaaCGCCaGUuAG-UCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 104521 0.73 0.520927
Target:  5'- gCCGCcGCGuUUGCGGcgcugCGcggCGGCCCCg -3'
miRNA:   3'- -GGCGuCGC-AACGCCa----GUua-GUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 104390 0.72 0.581017
Target:  5'- gCUGCAGCGggccGCGGUCuacgcccgcccAGUCGGCCa- -3'
miRNA:   3'- -GGCGUCGCaa--CGCCAG-----------UUAGUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 104344 0.68 0.834068
Target:  5'- gCCGCGGCGgcagacGCGG-CGgcGUCcGCgCCCg -3'
miRNA:   3'- -GGCGUCGCaa----CGCCaGU--UAGuCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 104069 0.68 0.825667
Target:  5'- gCCGCAGCGgcGCGc-CG---AGCCCCc -3'
miRNA:   3'- -GGCGUCGCaaCGCcaGUuagUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 103948 0.66 0.918732
Target:  5'- aCCaGCGGCGgcGCcucGG-CGcgCGGCUCCg -3'
miRNA:   3'- -GG-CGUCGCaaCG---CCaGUuaGUCGGGG- -5'
6354 5' -55.7 NC_001847.1 + 103416 0.67 0.850312
Target:  5'- uCCGCGGCcgcuccgcaGCGG-CGcgCGGCCCg -3'
miRNA:   3'- -GGCGUCGcaa------CGCCaGUuaGUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 103296 0.68 0.825667
Target:  5'- -aGCAGCGgcgGCGG-CGGggCGGCCgCg -3'
miRNA:   3'- ggCGUCGCaa-CGCCaGUUa-GUCGGgG- -5'
6354 5' -55.7 NC_001847.1 + 102997 0.73 0.550721
Target:  5'- gUCGCGGCGUgcGCGGgcgCGG-CGGCgCCCa -3'
miRNA:   3'- -GGCGUCGCAa-CGCCa--GUUaGUCG-GGG- -5'
6354 5' -55.7 NC_001847.1 + 102297 0.67 0.87317
Target:  5'- gCGCgAGCGccGCGGUCucggCGGCCa- -3'
miRNA:   3'- gGCG-UCGCaaCGCCAGuua-GUCGGgg -5'
6354 5' -55.7 NC_001847.1 + 102278 0.66 0.887336
Target:  5'- gCCGuCGGCcgccgUGaGGUCGAUgGGCCCg -3'
miRNA:   3'- -GGC-GUCGca---ACgCCAGUUAgUCGGGg -5'
6354 5' -55.7 NC_001847.1 + 102152 0.67 0.86576
Target:  5'- aCCaCGGCGgcGCGGcccgccgCAAgcUCAGCCgCCa -3'
miRNA:   3'- -GGcGUCGCaaCGCCa------GUU--AGUCGG-GG- -5'
6354 5' -55.7 NC_001847.1 + 101641 0.67 0.86576
Target:  5'- uCCGUGuCGUcaaugGCGGUCAGgucggaggugcUgAGCCCCg -3'
miRNA:   3'- -GGCGUcGCAa----CGCCAGUU-----------AgUCGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.