Results 1 - 20 of 111 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6355 | 5' | -57.1 | NC_001847.1 | + | 83569 | 0.66 | 0.850142 |
Target: 5'- cUCGGGcuUCUgguAGGCGC-CCGCGagCCCg -3' miRNA: 3'- aAGUUC--AGG---UUCGCGaGGCGCagGGG- -5' |
|||||||
6355 | 5' | -57.1 | NC_001847.1 | + | 36554 | 0.66 | 0.850142 |
Target: 5'- ----cGcCCAAGCGC-CgGCG-CCCCa -3' miRNA: 3'- aaguuCaGGUUCGCGaGgCGCaGGGG- -5' |
|||||||
6355 | 5' | -57.1 | NC_001847.1 | + | 121051 | 0.66 | 0.850142 |
Target: 5'- ---uGGUCCGccAGCGcCUCCGCGaUgUCCa -3' miRNA: 3'- aaguUCAGGU--UCGC-GAGGCGC-AgGGG- -5' |
|||||||
6355 | 5' | -57.1 | NC_001847.1 | + | 12091 | 0.66 | 0.850142 |
Target: 5'- -gCGGGUCC-GGCGC-CCGCGgCCg- -3' miRNA: 3'- aaGUUCAGGuUCGCGaGGCGCaGGgg -5' |
|||||||
6355 | 5' | -57.1 | NC_001847.1 | + | 132881 | 0.66 | 0.850142 |
Target: 5'- aUUCGuucCCGAGgGCcgCCGCGUCaCCUg -3' miRNA: 3'- -AAGUucaGGUUCgCGa-GGCGCAG-GGG- -5' |
|||||||
6355 | 5' | -57.1 | NC_001847.1 | + | 46254 | 0.66 | 0.849344 |
Target: 5'- cUCGGGUguggCCcAGCGCUcguguauguaccgCCGCGUCUCg -3' miRNA: 3'- aAGUUCA----GGuUCGCGA-------------GGCGCAGGGg -5' |
|||||||
6355 | 5' | -57.1 | NC_001847.1 | + | 96011 | 0.66 | 0.842077 |
Target: 5'- uUUCGAGcCCcAGCGCggCGCGUCggCCg -3' miRNA: 3'- -AAGUUCaGGuUCGCGagGCGCAGg-GG- -5' |
|||||||
6355 | 5' | -57.1 | NC_001847.1 | + | 54933 | 0.66 | 0.842077 |
Target: 5'- cUUGAGcgCCcuGCGCUUCGCGgcgCaCCCg -3' miRNA: 3'- aAGUUCa-GGuuCGCGAGGCGCa--G-GGG- -5' |
|||||||
6355 | 5' | -57.1 | NC_001847.1 | + | 60433 | 0.66 | 0.842077 |
Target: 5'- cUCGGcGUCCAcGCGCgcgUCgGCGcugCCCCc -3' miRNA: 3'- aAGUU-CAGGUuCGCG---AGgCGCa--GGGG- -5' |
|||||||
6355 | 5' | -57.1 | NC_001847.1 | + | 41560 | 0.66 | 0.83382 |
Target: 5'- --aGAGUgCGAGCGCgUCGUGUCCg- -3' miRNA: 3'- aagUUCAgGUUCGCGaGGCGCAGGgg -5' |
|||||||
6355 | 5' | -57.1 | NC_001847.1 | + | 83127 | 0.66 | 0.83382 |
Target: 5'- -gCGAGcgCUAGuGCGCgccugCUGCGUCCCg -3' miRNA: 3'- aaGUUCa-GGUU-CGCGa----GGCGCAGGGg -5' |
|||||||
6355 | 5' | -57.1 | NC_001847.1 | + | 64325 | 0.66 | 0.83382 |
Target: 5'- -aCGGGgaCUcGGCGCUCgGCGgaUCCCCu -3' miRNA: 3'- aaGUUCa-GGuUCGCGAGgCGC--AGGGG- -5' |
|||||||
6355 | 5' | -57.1 | NC_001847.1 | + | 48581 | 0.66 | 0.83382 |
Target: 5'- ----cGUCUucGGCGCcguccUCgGCGUCCCCc -3' miRNA: 3'- aaguuCAGGu-UCGCG-----AGgCGCAGGGG- -5' |
|||||||
6355 | 5' | -57.1 | NC_001847.1 | + | 64844 | 0.66 | 0.83382 |
Target: 5'- -cCGAGaCCAgcgcGGCGCgCCGCGaCCCg -3' miRNA: 3'- aaGUUCaGGU----UCGCGaGGCGCaGGGg -5' |
|||||||
6355 | 5' | -57.1 | NC_001847.1 | + | 91886 | 0.66 | 0.83382 |
Target: 5'- -gCAGGUgccccCCGGGCGCcgcgccgcCCGCGcgCCCCc -3' miRNA: 3'- aaGUUCA-----GGUUCGCGa-------GGCGCa-GGGG- -5' |
|||||||
6355 | 5' | -57.1 | NC_001847.1 | + | 104706 | 0.66 | 0.83382 |
Target: 5'- cUCGugcAGcCCcGGCGcCUCCGCGcCCgCCa -3' miRNA: 3'- aAGU---UCaGGuUCGC-GAGGCGCaGG-GG- -5' |
|||||||
6355 | 5' | -57.1 | NC_001847.1 | + | 66752 | 0.66 | 0.825376 |
Target: 5'- ---uGG-CCGAGUGCUUCGUGUCgCUCg -3' miRNA: 3'- aaguUCaGGUUCGCGAGGCGCAG-GGG- -5' |
|||||||
6355 | 5' | -57.1 | NC_001847.1 | + | 323 | 0.66 | 0.825376 |
Target: 5'- --gGAG-CUucGCGCUccacgcCCGCGUCCCUc -3' miRNA: 3'- aagUUCaGGuuCGCGA------GGCGCAGGGG- -5' |
|||||||
6355 | 5' | -57.1 | NC_001847.1 | + | 103136 | 0.66 | 0.825376 |
Target: 5'- --gGAG-CUucGCGCUccacgcCCGCGUCCCUc -3' miRNA: 3'- aagUUCaGGuuCGCGA------GGCGCAGGGG- -5' |
|||||||
6355 | 5' | -57.1 | NC_001847.1 | + | 39545 | 0.66 | 0.822808 |
Target: 5'- ----uGUCCAcguaagccucgaagGGCGCgUCCGCGaaggccgCCCCg -3' miRNA: 3'- aaguuCAGGU--------------UCGCG-AGGCGCa------GGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home