miRNA display CGI


Results 1 - 20 of 601 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6356 3' -61.4 NC_001847.1 + 32510 0.65 0.680774
Target:  5'- gGGGCuggCCGCGUACaCGCggCUgucggaggcgaugCgCGCGCa -3'
miRNA:   3'- -UCCG---GGCGCAUG-GCGa-GAa------------GgGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 27456 0.66 0.674877
Target:  5'- gGGGCCC---UGCCGCUg--CCCGcCGCc -3'
miRNA:   3'- -UCCGGGcgcAUGGCGAgaaGGGC-GCG- -5'
6356 3' -61.4 NC_001847.1 + 44300 0.66 0.674877
Target:  5'- cGGCCC-CGgggcGCCGCUCgcugaUCUCGCc- -3'
miRNA:   3'- uCCGGGcGCa---UGGCGAGa----AGGGCGcg -5'
6356 3' -61.4 NC_001847.1 + 54262 0.66 0.674877
Target:  5'- uGGcGCCCGaCGaGCgGCUCgaggcgcucaUCCGCGCg -3'
miRNA:   3'- -UC-CGGGC-GCaUGgCGAGaa--------GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 79212 0.66 0.674877
Target:  5'- uGGGCUCGCGacgccgGCCGCggaUCacgggCGCGCu -3'
miRNA:   3'- -UCCGGGCGCa-----UGGCGagaAGg----GCGCG- -5'
6356 3' -61.4 NC_001847.1 + 130269 0.66 0.674877
Target:  5'- gGGGCCC---UGCCGCUg--CCCGcCGCc -3'
miRNA:   3'- -UCCGGGcgcAUGGCGAgaaGGGC-GCG- -5'
6356 3' -61.4 NC_001847.1 + 10809 0.66 0.674877
Target:  5'- uGGGCuacugCCGCGcGCUGCUgcagcaCCUGCGCg -3'
miRNA:   3'- -UCCG-----GGCGCaUGGCGAgaa---GGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 42049 0.66 0.674877
Target:  5'- -aGCCCGCc--CCGCUUUgcgggCgCGCGCg -3'
miRNA:   3'- ucCGGGCGcauGGCGAGAa----GgGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 52405 0.66 0.674877
Target:  5'- cGGCgCCGUGcuccaGgCGCUgggCCCGCGCg -3'
miRNA:   3'- uCCG-GGCGCa----UgGCGAgaaGGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 105739 0.66 0.674877
Target:  5'- cGGUCCGCGccgccagcgcgGCCGC-C-UCCaGCGCg -3'
miRNA:   3'- uCCGGGCGCa----------UGGCGaGaAGGgCGCG- -5'
6356 3' -61.4 NC_001847.1 + 134141 0.66 0.674877
Target:  5'- cGGCCugguggagCGCGUGCCGCcg--CCgGCGg -3'
miRNA:   3'- uCCGG--------GCGCAUGGCGagaaGGgCGCg -5'
6356 3' -61.4 NC_001847.1 + 61433 0.66 0.674877
Target:  5'- -cGCCCGCG-GCCGCgccgCCgGgCGCg -3'
miRNA:   3'- ucCGGGCGCaUGGCGagaaGGgC-GCG- -5'
6356 3' -61.4 NC_001847.1 + 75528 0.66 0.674877
Target:  5'- cGGgCgGCGU-CUGCauugcgCUUCCCGuCGCg -3'
miRNA:   3'- uCCgGgCGCAuGGCGa-----GAAGGGC-GCG- -5'
6356 3' -61.4 NC_001847.1 + 2926 0.66 0.674877
Target:  5'- cGGUCCGCGccgccagcgcgGCCGC-C-UCCaGCGCg -3'
miRNA:   3'- uCCGGGCGCa----------UGGCGaGaAGGgCGCG- -5'
6356 3' -61.4 NC_001847.1 + 31328 0.66 0.674877
Target:  5'- cGGCCugguggagCGCGUGCCGCcg--CCgGCGg -3'
miRNA:   3'- uCCGG--------GCGCAUGGCGagaaGGgCGCg -5'
6356 3' -61.4 NC_001847.1 + 32269 0.66 0.674877
Target:  5'- cGGGCCCGcCGcGCCGaaaUUUCCGCc- -3'
miRNA:   3'- -UCCGGGC-GCaUGGCgagAAGGGCGcg -5'
6356 3' -61.4 NC_001847.1 + 51676 0.66 0.674877
Target:  5'- cAGGgCgGCGUACgCGCgcgCcgUCgCGCGCc -3'
miRNA:   3'- -UCCgGgCGCAUG-GCGa--Ga-AGgGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 102164 0.66 0.674877
Target:  5'- cGGCCCGCcgcaagcucaGCCGCcaagUCggccaCCGCGCu -3'
miRNA:   3'- uCCGGGCGca--------UGGCG----AGaag--GGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 128072 0.66 0.674877
Target:  5'- uGGCCCGg--GCgGCUCg--CCGCGUg -3'
miRNA:   3'- uCCGGGCgcaUGgCGAGaagGGCGCG- -5'
6356 3' -61.4 NC_001847.1 + 32711 0.66 0.674877
Target:  5'- -uGCCCGCuGUGCaagGCg---CCCGUGCa -3'
miRNA:   3'- ucCGGGCG-CAUGg--CGagaaGGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.