Results 1 - 20 of 513 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6359 | 5' | -64.6 | NC_001847.1 | + | 41069 | 0.65 | 0.513398 |
Target: 5'- gGGCUgGCCGCgcaaacguacuggUGCCGGcCCAGcuGCg -3' miRNA: 3'- aCUGGgCGGCGa------------ACGGCC-GGUCccCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 105655 | 0.66 | 0.507822 |
Target: 5'- -cGCCCGCgGCcggagagcgUGCCgccucGGCCGcGGGCg -3' miRNA: 3'- acUGGGCGgCGa--------ACGG-----CCGGUcCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 105625 | 0.66 | 0.507822 |
Target: 5'- cGGCCgccaGCCGC--GCCGgcaccuccGCCGGcGGGCu -3' miRNA: 3'- aCUGGg---CGGCGaaCGGC--------CGGUC-CCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 9026 | 0.66 | 0.507822 |
Target: 5'- cGACCCcCUGCUagacgcgaUGCgGcGCgaGGGGGCa -3' miRNA: 3'- aCUGGGcGGCGA--------ACGgC-CGg-UCCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 33651 | 0.66 | 0.507822 |
Target: 5'- aGGCgCGCgCGCgcgugGCCgcGGCCcgcgcGGGGCu -3' miRNA: 3'- aCUGgGCG-GCGaa---CGG--CCGGu----CCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 27734 | 0.66 | 0.507822 |
Target: 5'- cGGCggaaGCCGCggcgGCgguugCGGCgGGGGGCu -3' miRNA: 3'- aCUGgg--CGGCGaa--CG-----GCCGgUCCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 106745 | 0.66 | 0.507822 |
Target: 5'- -cGCCCG-CGCUggcGCCGcGgCGGGGGg -3' miRNA: 3'- acUGGGCgGCGAa--CGGC-CgGUCCCCg -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 54815 | 0.66 | 0.507822 |
Target: 5'- cUGGCgCCGCUGUUUGCCG-CCAc-GGCc -3' miRNA: 3'- -ACUG-GGCGGCGAACGGCcGGUccCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 2812 | 0.66 | 0.507822 |
Target: 5'- cGGCCgccaGCCGC--GCCGgcaccuccGCCGGcGGGCu -3' miRNA: 3'- aCUGGg---CGGCGaaCGGC--------CGGUC-CCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 58539 | 0.66 | 0.507822 |
Target: 5'- aGG-CCGCCGCggucuucGCCGccGCCAGcGGCg -3' miRNA: 3'- aCUgGGCGGCGaa-----CGGC--CGGUCcCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 3932 | 0.66 | 0.507822 |
Target: 5'- -cGCCCG-CGCUggcGCCGcGgCGGGGGg -3' miRNA: 3'- acUGGGCgGCGAa--CGGC-CgGUCCCCg -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 32869 | 0.66 | 0.506895 |
Target: 5'- cGACCUcacggcgGCCGacgGCgaGGCCucGGGGGCc -3' miRNA: 3'- aCUGGG-------CGGCgaaCGg-CCGG--UCCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 74655 | 0.66 | 0.505044 |
Target: 5'- cGGCCCGCgCGCgcacaaagcggcggcGCCauGGCggacgcgcccgaCGGGGGCa -3' miRNA: 3'- aCUGGGCG-GCGaa-------------CGG--CCG------------GUCCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 132127 | 0.66 | 0.502272 |
Target: 5'- gUGACCgccccuauugggcggCGCUGC-UGCCGcGCaggguGGGGCc -3' miRNA: 3'- -ACUGG---------------GCGGCGaACGGC-CGgu---CCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 77195 | 0.66 | 0.502272 |
Target: 5'- cGACCgCGCUGC-UGCCcgcgacggagccgcgGGCCGccGGGCc -3' miRNA: 3'- aCUGG-GCGGCGaACGG---------------CCGGUc-CCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 204 | 0.66 | 0.498587 |
Target: 5'- -cGCCC-CCGCcc-CCGGCgccCGGGGGCc -3' miRNA: 3'- acUGGGcGGCGaacGGCCG---GUCCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 93735 | 0.66 | 0.498587 |
Target: 5'- cGGCCgGCUGCUagaccGCgCGGUCcGGGaGCg -3' miRNA: 3'- aCUGGgCGGCGAa----CG-GCCGGuCCC-CG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 103017 | 0.66 | 0.498587 |
Target: 5'- -cGCCC-CCGCcc-CCGGCgccCGGGGGCc -3' miRNA: 3'- acUGGGcGGCGaacGGCCG---GUCCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 99799 | 0.66 | 0.498587 |
Target: 5'- -cGCCUGUggUGCgggGUcggagCGGCCGGGGGCc -3' miRNA: 3'- acUGGGCG--GCGaa-CG-----GCCGGUCCCCG- -5' |
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6359 | 5' | -64.6 | NC_001847.1 | + | 55662 | 0.66 | 0.498587 |
Target: 5'- cGugCgCGCCGCgcuCCGGCucgcgCAGGcGGCc -3' miRNA: 3'- aCugG-GCGGCGaacGGCCG-----GUCC-CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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