Results 1 - 20 of 98 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6360 | 3' | -56.7 | NC_001847.1 | + | 46919 | 0.66 | 0.880395 |
Target: 5'- gGGGGCGcgucGGGcCCGGGcUCCGGGcCGc- -3' miRNA: 3'- -CCCCGU----UUC-GGCUCuAGGUCCaGCcu -5' |
|||||||
6360 | 3' | -56.7 | NC_001847.1 | + | 7612 | 0.66 | 0.880395 |
Target: 5'- cGGGGUggGGUgGGGGggUGGGUgGGGg -3' miRNA: 3'- -CCCCGuuUCGgCUCUagGUCCAgCCU- -5' |
|||||||
6360 | 3' | -56.7 | NC_001847.1 | + | 23378 | 0.66 | 0.880395 |
Target: 5'- cGGuuuGCGAcGCUGAgcgaccgcaaguGAUCUAGGUCGGGg -3' miRNA: 3'- -CCc--CGUUuCGGCU------------CUAGGUCCAGCCU- -5' |
|||||||
6360 | 3' | -56.7 | NC_001847.1 | + | 110425 | 0.66 | 0.880395 |
Target: 5'- cGGGGUggGGUgGGGGggUGGGUgGGGg -3' miRNA: 3'- -CCCCGuuUCGgCUCUagGUCCAgCCU- -5' |
|||||||
6360 | 3' | -56.7 | NC_001847.1 | + | 90745 | 0.66 | 0.880395 |
Target: 5'- cGGcGCGuGGCCGGGccCCGGGagCGGGa -3' miRNA: 3'- cCC-CGUuUCGGCUCuaGGUCCa-GCCU- -5' |
|||||||
6360 | 3' | -56.7 | NC_001847.1 | + | 75663 | 0.66 | 0.880395 |
Target: 5'- cGGGCGuuGCuCGuGAaggCCGGGUCGa- -3' miRNA: 3'- cCCCGUuuCG-GCuCUa--GGUCCAGCcu -5' |
|||||||
6360 | 3' | -56.7 | NC_001847.1 | + | 54497 | 0.66 | 0.873233 |
Target: 5'- -cGGCGgcGCCGGGG-CCGGGgUGGGg -3' miRNA: 3'- ccCCGUuuCGGCUCUaGGUCCaGCCU- -5' |
|||||||
6360 | 3' | -56.7 | NC_001847.1 | + | 106769 | 0.66 | 0.873233 |
Target: 5'- gGGGGCGccgucuccGGCgCGAGGgcgCCGGGggccCGGGc -3' miRNA: 3'- -CCCCGUu-------UCG-GCUCUa--GGUCCa---GCCU- -5' |
|||||||
6360 | 3' | -56.7 | NC_001847.1 | + | 118012 | 0.66 | 0.873233 |
Target: 5'- aGGaCGAAGCCGGGAgcgCCAG--CGGAa -3' miRNA: 3'- cCCcGUUUCGGCUCUa--GGUCcaGCCU- -5' |
|||||||
6360 | 3' | -56.7 | NC_001847.1 | + | 87915 | 0.66 | 0.865857 |
Target: 5'- aGGGGCGGGGCgUGGGG-CUGGGcgCGGc -3' miRNA: 3'- -CCCCGUUUCG-GCUCUaGGUCCa-GCCu -5' |
|||||||
6360 | 3' | -56.7 | NC_001847.1 | + | 117043 | 0.66 | 0.865857 |
Target: 5'- gGGGGCuc-GCCGAGG---AGG-CGGAa -3' miRNA: 3'- -CCCCGuuuCGGCUCUaggUCCaGCCU- -5' |
|||||||
6360 | 3' | -56.7 | NC_001847.1 | + | 85774 | 0.66 | 0.865857 |
Target: 5'- gGGGGCAGcGGCCGAuGcggugcgcGUCgAGGgugCGGGc -3' miRNA: 3'- -CCCCGUU-UCGGCU-C--------UAGgUCCa--GCCU- -5' |
|||||||
6360 | 3' | -56.7 | NC_001847.1 | + | 21892 | 0.66 | 0.861329 |
Target: 5'- uGGGCGAcgagacgaaggagacGGCCGAGG-CCGcGGgcgaggCGGAg -3' miRNA: 3'- cCCCGUU---------------UCGGCUCUaGGU-CCa-----GCCU- -5' |
|||||||
6360 | 3' | -56.7 | NC_001847.1 | + | 68984 | 0.66 | 0.85827 |
Target: 5'- cGGGCAcGGCCGAGAgcacgUCCAGcaCGu- -3' miRNA: 3'- cCCCGUuUCGGCUCU-----AGGUCcaGCcu -5' |
|||||||
6360 | 3' | -56.7 | NC_001847.1 | + | 114389 | 0.66 | 0.85827 |
Target: 5'- cGGGCAGGGaUUGcGGAUCCAcGUCGGc -3' miRNA: 3'- cCCCGUUUC-GGC-UCUAGGUcCAGCCu -5' |
|||||||
6360 | 3' | -56.7 | NC_001847.1 | + | 50045 | 0.66 | 0.85827 |
Target: 5'- cGGGGCGcgguggcGGCCGcGGGUCCGcgcgcGGcgCGGAc -3' miRNA: 3'- -CCCCGUu------UCGGC-UCUAGGU-----CCa-GCCU- -5' |
|||||||
6360 | 3' | -56.7 | NC_001847.1 | + | 96271 | 0.66 | 0.8575 |
Target: 5'- -uGGCGGGGCCG-GAaCCGGGgccguacUCGGGg -3' miRNA: 3'- ccCCGUUUCGGCuCUaGGUCC-------AGCCU- -5' |
|||||||
6360 | 3' | -56.7 | NC_001847.1 | + | 121423 | 0.67 | 0.8433 |
Target: 5'- aGGGCGGAGCCGuuGAgcggcccgaccgccgCCGGGUUGu- -3' miRNA: 3'- cCCCGUUUCGGCu-CUa--------------GGUCCAGCcu -5' |
|||||||
6360 | 3' | -56.7 | NC_001847.1 | + | 100010 | 0.67 | 0.842493 |
Target: 5'- -uGGCGA-GCCGAGGcacggccgCCAGGUCGc- -3' miRNA: 3'- ccCCGUUuCGGCUCUa-------GGUCCAGCcu -5' |
|||||||
6360 | 3' | -56.7 | NC_001847.1 | + | 81242 | 0.67 | 0.842493 |
Target: 5'- cGGGCGGGGCCGucg-CgAGGaCGGGg -3' miRNA: 3'- cCCCGUUUCGGCucuaGgUCCaGCCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home