Results 1 - 20 of 283 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6360 | 5' | -65.8 | NC_001847.1 | + | 132251 | 0.66 | 0.466626 |
Target: 5'- cGUCCG-GCCCGAacggcgacgcacccgGCCCGAcgacgacGCCCGcGa -3' miRNA: 3'- uCGGGCuCGGGCU---------------CGGGCU-------CGGGCuC- -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 71130 | 0.66 | 0.463986 |
Target: 5'- aAGCCCGucccgccGCCCGGGUa-GAGCUCGcGg -3' miRNA: 3'- -UCGGGCu------CGGGCUCGggCUCGGGCuC- -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 61959 | 0.66 | 0.463986 |
Target: 5'- uGCCCGcGCgCCGuGCCCGccGGCgCGGc -3' miRNA: 3'- uCGGGCuCG-GGCuCGGGC--UCGgGCUc -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 73712 | 0.66 | 0.463986 |
Target: 5'- cGCCCGgcGGCgCG-GCCgCGGGCgUCGAGg -3' miRNA: 3'- uCGGGC--UCGgGCuCGG-GCUCG-GGCUC- -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 82110 | 0.66 | 0.463986 |
Target: 5'- cGCCUGcguuugcGCCUGccGCCCGAcGCCCGGa -3' miRNA: 3'- uCGGGCu------CGGGCu-CGGGCU-CGGGCUc -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 39204 | 0.66 | 0.463986 |
Target: 5'- cGCCCGccagcguuccGGCgCCGGGCUCaGAGCUCGu- -3' miRNA: 3'- uCGGGC----------UCG-GGCUCGGG-CUCGGGCuc -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 71972 | 0.66 | 0.461353 |
Target: 5'- cGGCgCGAGCuggCCGaAGCCaacuuccgcaacguCGGGCCCGAc -3' miRNA: 3'- -UCGgGCUCG---GGC-UCGG--------------GCUCGGGCUc -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 17034 | 0.66 | 0.461353 |
Target: 5'- gGGCCCGcuggcGGUCCGGaacaugucgcuuucGCUaaaGAGCCCGAc -3' miRNA: 3'- -UCGGGC-----UCGGGCU--------------CGGg--CUCGGGCUc -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 80698 | 0.66 | 0.458729 |
Target: 5'- gGGCUCGucCCCGccccccucgucucuGCCCGGGCCgcCGAGg -3' miRNA: 3'- -UCGGGCucGGGCu-------------CGGGCUCGG--GCUC- -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 103476 | 0.66 | 0.455242 |
Target: 5'- cGCCCuuagcuccucgGGGCgCgCGGGCuCCGGGCCCGc- -3' miRNA: 3'- uCGGG-----------CUCG-G-GCUCG-GGCUCGGGCuc -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 78998 | 0.66 | 0.455242 |
Target: 5'- uGCCCGuGCgguaGAGCCCcgccGAGCCCa-- -3' miRNA: 3'- uCGGGCuCGgg--CUCGGG----CUCGGGcuc -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 70558 | 0.66 | 0.455242 |
Target: 5'- gGGCCaCGcGCUCaauGCCCcgcGGCCCGAGg -3' miRNA: 3'- -UCGG-GCuCGGGcu-CGGGc--UCGGGCUC- -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 68848 | 0.66 | 0.455242 |
Target: 5'- gAGCUCGGGCgCGAggcggcggcguGCgCCGGGCCgaaGAGg -3' miRNA: 3'- -UCGGGCUCGgGCU-----------CG-GGCUCGGg--CUC- -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 107339 | 0.66 | 0.455242 |
Target: 5'- cGCCgGGGCgCGAaugGCCaGAGCCCGc- -3' miRNA: 3'- uCGGgCUCGgGCU---CGGgCUCGGGCuc -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 126509 | 0.66 | 0.455242 |
Target: 5'- cGCCCGAGUCCGcAGCggCCGcuccCCCGGc -3' miRNA: 3'- uCGGGCUCGGGC-UCG--GGCuc--GGGCUc -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 77377 | 0.66 | 0.455242 |
Target: 5'- uGGCgCCGGcGCCCGcucucGCUCGuGGCCCGGc -3' miRNA: 3'- -UCG-GGCU-CGGGCu----CGGGC-UCGGGCUc -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 98700 | 0.66 | 0.455242 |
Target: 5'- aAGCCgGGGCcgaagCCGGGgCCGAaGCCgGGGc -3' miRNA: 3'- -UCGGgCUCG-----GGCUCgGGCU-CGGgCUC- -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 98664 | 0.66 | 0.455242 |
Target: 5'- aAGCCgGGGCcgaagCCGGGgCCGAaGCCgGGGc -3' miRNA: 3'- -UCGGgCUCG-----GGCUCgGGCU-CGGgCUC- -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 100843 | 0.66 | 0.446588 |
Target: 5'- cGCCCGaAGCCuCGcugacGGCCgCGAGCgCGGc -3' miRNA: 3'- uCGGGC-UCGG-GC-----UCGG-GCUCGgGCUc -5' |
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6360 | 5' | -65.8 | NC_001847.1 | + | 76302 | 0.66 | 0.446588 |
Target: 5'- aGGUgCGGGCCCG-GCCCaAGUgCCGAc -3' miRNA: 3'- -UCGgGCUCGGGCuCGGGcUCG-GGCUc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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