miRNA display CGI


Results 41 - 60 of 283 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6360 5' -65.8 NC_001847.1 + 118832 0.68 0.335995
Target:  5'- gGGCgCgGAGCCgaGGGCgCGAGCgCGAGu -3'
miRNA:   3'- -UCG-GgCUCGGg-CUCGgGCUCGgGCUC- -5'
6360 5' -65.8 NC_001847.1 + 118293 0.67 0.380863
Target:  5'- gAGCCCGcucGCCuCGAGCgCCGc-CCCGAu -3'
miRNA:   3'- -UCGGGCu--CGG-GCUCG-GGCucGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 117208 0.67 0.412919
Target:  5'- cGCCgGAGCCgccGUCCGuGUCCGAGc -3'
miRNA:   3'- uCGGgCUCGGgcuCGGGCuCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 116416 0.74 0.130071
Target:  5'- gGGcCCCGGGCCgCGcGCuuGGGCUCGAGg -3'
miRNA:   3'- -UC-GGGCUCGG-GCuCGggCUCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 116131 0.69 0.282368
Target:  5'- cGGCCgGGcGCUgGGGCgCGcGGCCCGAGg -3'
miRNA:   3'- -UCGGgCU-CGGgCUCGgGC-UCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 115533 0.88 0.01233
Target:  5'- cGcCCCGGGCCCGAGCUCGGGCCCGGa -3'
miRNA:   3'- uC-GGGCUCGGGCUCGGGCUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 115203 0.73 0.165769
Target:  5'- aGGgCCGAGCCCucGCgCG-GCCCGAGu -3'
miRNA:   3'- -UCgGGCUCGGGcuCGgGCuCGGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 114978 0.77 0.089657
Target:  5'- cGCCCGuuGCCUGAGCgCCGAGUCCGc- -3'
miRNA:   3'- uCGGGCu-CGGGCUCG-GGCUCGGGCuc -5'
6360 5' -65.8 NC_001847.1 + 114081 0.66 0.42119
Target:  5'- gGGCCCc-GCCCcaGGGCCUcaGGGCCgGGGg -3'
miRNA:   3'- -UCGGGcuCGGG--CUCGGG--CUCGGgCUC- -5'
6360 5' -65.8 NC_001847.1 + 113777 0.69 0.301645
Target:  5'- cGCCCGAGgC--GGCCCGAGCCgcCGAc -3'
miRNA:   3'- uCGGGCUCgGgcUCGGGCUCGG--GCUc -5'
6360 5' -65.8 NC_001847.1 + 113709 0.71 0.220009
Target:  5'- gAGCCgGAGCUUuGGCCCGcucgcucggccGGCCCGAa -3'
miRNA:   3'- -UCGGgCUCGGGcUCGGGC-----------UCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 113512 0.68 0.335995
Target:  5'- cGCCCGGGCgCG-GCCCGcGCCgGc- -3'
miRNA:   3'- uCGGGCUCGgGCuCGGGCuCGGgCuc -5'
6360 5' -65.8 NC_001847.1 + 113354 0.75 0.11501
Target:  5'- gGGCCCGGggacccgcGCCCGgccGGCgCCGGGCCCGGc -3'
miRNA:   3'- -UCGGGCU--------CGGGC---UCG-GGCUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 113192 0.67 0.396683
Target:  5'- cGGCCCaGcGCCCGGacgaCCGAGCUCGGa -3'
miRNA:   3'- -UCGGG-CuCGGGCUcg--GGCUCGGGCUc -5'
6360 5' -65.8 NC_001847.1 + 112974 0.68 0.328902
Target:  5'- cGCCCGAGCaggCCG-GCCCGcuGCgCCGGc -3'
miRNA:   3'- uCGGGCUCG---GGCuCGGGCu-CG-GGCUc -5'
6360 5' -65.8 NC_001847.1 + 112758 0.67 0.38872
Target:  5'- cGCCgCG-GCCCGGGCgcuucugccCCGAGgacuggcgcCCCGAGg -3'
miRNA:   3'- uCGG-GCuCGGGCUCG---------GGCUC---------GGGCUC- -5'
6360 5' -65.8 NC_001847.1 + 112636 0.68 0.335995
Target:  5'- cGGCCCG-GCCCGccgccGCCaUGAGCCaCGGc -3'
miRNA:   3'- -UCGGGCuCGGGCu----CGG-GCUCGG-GCUc -5'
6360 5' -65.8 NC_001847.1 + 112214 0.69 0.301645
Target:  5'- cAGCCC-AGCCC-AGCCC-AGCCCa-- -3'
miRNA:   3'- -UCGGGcUCGGGcUCGGGcUCGGGcuc -5'
6360 5' -65.8 NC_001847.1 + 112154 0.69 0.301645
Target:  5'- cAGCCC-AGCCC-AGCCC-AGCCCa-- -3'
miRNA:   3'- -UCGGGcUCGGGcUCGGGcUCGGGcuc -5'
6360 5' -65.8 NC_001847.1 + 112114 0.69 0.301645
Target:  5'- cAGCCC-AGCCC-AGCCC-AGCCCa-- -3'
miRNA:   3'- -UCGGGcUCGGGcUCGGGcUCGGGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.