Results 1 - 20 of 200 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6362 | 5' | -50.3 | NC_001847.1 | + | 116680 | 0.66 | 0.994751 |
Target: 5'- ----uGUGGguccGGCGCUGCgg--GCGCGg -3' miRNA: 3'- gauugUACC----UCGCGGCGaaaaUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 3912 | 0.66 | 0.994751 |
Target: 5'- -cAGCGcGG-GCGCCGg--UUGCGCGc -3' miRNA: 3'- gaUUGUaCCuCGCGGCgaaAAUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 44440 | 0.66 | 0.994751 |
Target: 5'- --cGCAcgGGGGCGCgGC----GCGCGg -3' miRNA: 3'- gauUGUa-CCUCGCGgCGaaaaUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 19325 | 0.66 | 0.994751 |
Target: 5'- ---cCGUGGcuguuaacgcaAGCGCCGCggccgggucUUGCGCGc -3' miRNA: 3'- gauuGUACC-----------UCGCGGCGaa-------AAUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 37503 | 0.66 | 0.994751 |
Target: 5'- -cGACGccuuuuUGGcGCGCCGCcUggACGCa -3' miRNA: 3'- gaUUGU------ACCuCGCGGCGaAaaUGCGc -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 106725 | 0.66 | 0.994751 |
Target: 5'- -cAGCGcGG-GCGCCGg--UUGCGCGc -3' miRNA: 3'- gaUUGUaCCuCGCGGCgaaAAUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 78413 | 0.66 | 0.994751 |
Target: 5'- --uGCG-GGcGCGCUGCUg--GCGCGc -3' miRNA: 3'- gauUGUaCCuCGCGGCGAaaaUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 58896 | 0.66 | 0.994751 |
Target: 5'- -aAGCAcGGcaaauGCGCCGCgggcgggugUUGCGCa -3' miRNA: 3'- gaUUGUaCCu----CGCGGCGaa-------AAUGCGc -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 61318 | 0.66 | 0.994751 |
Target: 5'- -cGGCA-GGAcgcGCaGCCGCUgcaGCGCGg -3' miRNA: 3'- gaUUGUaCCU---CG-CGGCGAaaaUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 74365 | 0.66 | 0.994751 |
Target: 5'- --cGCGUGGuGGCGCgCGCgguagagGCGCu -3' miRNA: 3'- gauUGUACC-UCGCG-GCGaaaa---UGCGc -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 33342 | 0.66 | 0.994751 |
Target: 5'- -cGGCcUGGguGGCGCUGCUgcacgagGCGCa -3' miRNA: 3'- gaUUGuACC--UCGCGGCGAaaa----UGCGc -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 42606 | 0.66 | 0.994751 |
Target: 5'- gUGACAgGGAcgGCGCCGC-----CGCGg -3' miRNA: 3'- gAUUGUaCCU--CGCGGCGaaaauGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 11347 | 0.66 | 0.99467 |
Target: 5'- -gAGCG-GGAGCacucguacgcgcgGCCGCgcg-GCGCGa -3' miRNA: 3'- gaUUGUaCCUCG-------------CGGCGaaaaUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 60872 | 0.66 | 0.994421 |
Target: 5'- -cAGCGcGGGGCgGCCGCgcccgggaagagUUGCGUGa -3' miRNA: 3'- gaUUGUaCCUCG-CGGCGaa----------AAUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 41984 | 0.66 | 0.993894 |
Target: 5'- uCUGucuCGccGAGCGCUGCgucgGCGCGg -3' miRNA: 3'- -GAUu--GUacCUCGCGGCGaaaaUGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 89089 | 0.66 | 0.993894 |
Target: 5'- --cACcgGGAGUaCCGCg--UGCGCa -3' miRNA: 3'- gauUGuaCCUCGcGGCGaaaAUGCGc -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 131648 | 0.66 | 0.993894 |
Target: 5'- -gAGCGUGacGGCGCCGCUgc--CGCc -3' miRNA: 3'- gaUUGUACc-UCGCGGCGAaaauGCGc -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 61262 | 0.66 | 0.993894 |
Target: 5'- --uGCGcGGGGCGCCGgCggaacugACGCGc -3' miRNA: 3'- gauUGUaCCUCGCGGC-Gaaaa---UGCGC- -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 28835 | 0.66 | 0.993894 |
Target: 5'- -gAGCGUGacGGCGCCGCUgc--CGCc -3' miRNA: 3'- gaUUGUACc-UCGCGGCGAaaauGCGc -5' |
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6362 | 5' | -50.3 | NC_001847.1 | + | 70124 | 0.66 | 0.993894 |
Target: 5'- --cACGUGGcgcucGCGCCGCUUgcggucCGCu -3' miRNA: 3'- gauUGUACCu----CGCGGCGAAaau---GCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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