miRNA display CGI


Results 1 - 20 of 200 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6362 5' -50.3 NC_001847.1 + 3912 0.66 0.994751
Target:  5'- -cAGCGcGG-GCGCCGg--UUGCGCGc -3'
miRNA:   3'- gaUUGUaCCuCGCGGCgaaAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 37503 0.66 0.994751
Target:  5'- -cGACGccuuuuUGGcGCGCCGCcUggACGCa -3'
miRNA:   3'- gaUUGU------ACCuCGCGGCGaAaaUGCGc -5'
6362 5' -50.3 NC_001847.1 + 74365 0.66 0.994751
Target:  5'- --cGCGUGGuGGCGCgCGCgguagagGCGCu -3'
miRNA:   3'- gauUGUACC-UCGCG-GCGaaaa---UGCGc -5'
6362 5' -50.3 NC_001847.1 + 44440 0.66 0.994751
Target:  5'- --cGCAcgGGGGCGCgGC----GCGCGg -3'
miRNA:   3'- gauUGUa-CCUCGCGgCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 33342 0.66 0.994751
Target:  5'- -cGGCcUGGguGGCGCUGCUgcacgagGCGCa -3'
miRNA:   3'- gaUUGuACC--UCGCGGCGAaaa----UGCGc -5'
6362 5' -50.3 NC_001847.1 + 19325 0.66 0.994751
Target:  5'- ---cCGUGGcuguuaacgcaAGCGCCGCggccgggucUUGCGCGc -3'
miRNA:   3'- gauuGUACC-----------UCGCGGCGaa-------AAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 42606 0.66 0.994751
Target:  5'- gUGACAgGGAcgGCGCCGC-----CGCGg -3'
miRNA:   3'- gAUUGUaCCU--CGCGGCGaaaauGCGC- -5'
6362 5' -50.3 NC_001847.1 + 61318 0.66 0.994751
Target:  5'- -cGGCA-GGAcgcGCaGCCGCUgcaGCGCGg -3'
miRNA:   3'- gaUUGUaCCU---CG-CGGCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 78413 0.66 0.994751
Target:  5'- --uGCG-GGcGCGCUGCUg--GCGCGc -3'
miRNA:   3'- gauUGUaCCuCGCGGCGAaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 116680 0.66 0.994751
Target:  5'- ----uGUGGguccGGCGCUGCgg--GCGCGg -3'
miRNA:   3'- gauugUACC----UCGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 58896 0.66 0.994751
Target:  5'- -aAGCAcGGcaaauGCGCCGCgggcgggugUUGCGCa -3'
miRNA:   3'- gaUUGUaCCu----CGCGGCGaa-------AAUGCGc -5'
6362 5' -50.3 NC_001847.1 + 106725 0.66 0.994751
Target:  5'- -cAGCGcGG-GCGCCGg--UUGCGCGc -3'
miRNA:   3'- gaUUGUaCCuCGCGGCgaaAAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 11347 0.66 0.99467
Target:  5'- -gAGCG-GGAGCacucguacgcgcgGCCGCgcg-GCGCGa -3'
miRNA:   3'- gaUUGUaCCUCG-------------CGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 60872 0.66 0.994421
Target:  5'- -cAGCGcGGGGCgGCCGCgcccgggaagagUUGCGUGa -3'
miRNA:   3'- gaUUGUaCCUCG-CGGCGaa----------AAUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 41984 0.66 0.993894
Target:  5'- uCUGucuCGccGAGCGCUGCgucgGCGCGg -3'
miRNA:   3'- -GAUu--GUacCUCGCGGCGaaaaUGCGC- -5'
6362 5' -50.3 NC_001847.1 + 84123 0.66 0.993894
Target:  5'- --cGCAgccaGAGCGCCGCgaaagcugGCGUGg -3'
miRNA:   3'- gauUGUac--CUCGCGGCGaaaa----UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 70124 0.66 0.993894
Target:  5'- --cACGUGGcgcucGCGCCGCUUgcggucCGCu -3'
miRNA:   3'- gauUGUACCu----CGCGGCGAAaau---GCGc -5'
6362 5' -50.3 NC_001847.1 + 28835 0.66 0.993894
Target:  5'- -gAGCGUGacGGCGCCGCUgc--CGCc -3'
miRNA:   3'- gaUUGUACc-UCGCGGCGAaaauGCGc -5'
6362 5' -50.3 NC_001847.1 + 61262 0.66 0.993894
Target:  5'- --uGCGcGGGGCGCCGgCggaacugACGCGc -3'
miRNA:   3'- gauUGUaCCUCGCGGC-Gaaaa---UGCGC- -5'
6362 5' -50.3 NC_001847.1 + 131648 0.66 0.993894
Target:  5'- -gAGCGUGacGGCGCCGCUgc--CGCc -3'
miRNA:   3'- gaUUGUACc-UCGCGGCGAaaauGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.