miRNA display CGI


Results 1 - 20 of 273 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 3' -55.9 NC_001847.1 + 116319 0.66 0.919534
Target:  5'- gCGCgCGAGGacgcCGUGcccaUGCGCgcgcUGGCGCg -3'
miRNA:   3'- gGUG-GCUCCc---GCAC----AUGUGa---ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 33568 0.66 0.919534
Target:  5'- aCGCgGGGGGCGUcugGCGCggcccgGGCucgGCg -3'
miRNA:   3'- gGUGgCUCCCGCAca-UGUGaa----CCG---CG- -5'
6363 3' -55.9 NC_001847.1 + 77346 0.66 0.919534
Target:  5'- gCUGCUGGGcGGCGacacgccGUGCgACgcgUGGCGCc -3'
miRNA:   3'- -GGUGGCUC-CCGCa------CAUG-UGa--ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 27757 0.66 0.919534
Target:  5'- gCgGCgGGGGGC-UGUGCGg--GGCGUa -3'
miRNA:   3'- -GgUGgCUCCCGcACAUGUgaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 23080 0.66 0.919534
Target:  5'- gUCGCCGAGGGCGcccucuacGUAgccCGCgc-GCGCc -3'
miRNA:   3'- -GGUGGCUCCCGCa-------CAU---GUGaacCGCG- -5'
6363 3' -55.9 NC_001847.1 + 60460 0.66 0.919534
Target:  5'- gCCcCCGucGGGCGcGUcCGCcaUGGCGCc -3'
miRNA:   3'- -GGuGGCu-CCCGCaCAuGUGa-ACCGCG- -5'
6363 3' -55.9 NC_001847.1 + 48692 0.66 0.913789
Target:  5'- gCGCCGucGGCGUccagGCAgCgcGGCGCg -3'
miRNA:   3'- gGUGGCucCCGCAca--UGU-GaaCCGCG- -5'
6363 3' -55.9 NC_001847.1 + 14161 0.66 0.913789
Target:  5'- gCCGCU-AGGGCGacgGccGCGCUUacgcGGCGCu -3'
miRNA:   3'- -GGUGGcUCCCGCa--Ca-UGUGAA----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 68074 0.66 0.913789
Target:  5'- gCCugCGgcGGGGCGa--ACGCcgcGGCGCg -3'
miRNA:   3'- -GGugGC--UCCCGCacaUGUGaa-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 33059 0.66 0.913789
Target:  5'- gCgGCCGAGGcgcuGCGgcaGUACuuuCUgcgcGGCGCg -3'
miRNA:   3'- -GgUGGCUCC----CGCa--CAUGu--GAa---CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 102846 0.66 0.913789
Target:  5'- aCC-CCGGGGGgGUGUuuuuggggggggGCggaaAUUUcGGCGCg -3'
miRNA:   3'- -GGuGGCUCCCgCACA------------UG----UGAA-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 74483 0.66 0.913789
Target:  5'- gCCG-CGAGGGCGcGgACGCggccGCGCg -3'
miRNA:   3'- -GGUgGCUCCCGCaCaUGUGaac-CGCG- -5'
6363 3' -55.9 NC_001847.1 + 83141 0.66 0.913789
Target:  5'- gCCGCCGcggcgucGGGCGcGUcCGCgaugcgccGGCGCa -3'
miRNA:   3'- -GGUGGCu------CCCGCaCAuGUGaa------CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 33 0.66 0.913789
Target:  5'- aCC-CCGGGGGgGUGUuuuuggggggggGCggaaAUUUcGGCGCg -3'
miRNA:   3'- -GGuGGCUCCCgCACA------------UG----UGAA-CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 125506 0.66 0.913789
Target:  5'- gCUGCuCGAGcGGCGggccgGCGCggcggcgGGCGCa -3'
miRNA:   3'- -GGUG-GCUC-CCGCaca--UGUGaa-----CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 77929 0.66 0.913789
Target:  5'- -gACCGGcGGGCGgcUGUagcaaACGCcgccgGGCGCg -3'
miRNA:   3'- ggUGGCU-CCCGC--ACA-----UGUGaa---CCGCG- -5'
6363 3' -55.9 NC_001847.1 + 42117 0.66 0.913789
Target:  5'- gCGCCGGGGGCcgcuuccCGCgUUGGCGa -3'
miRNA:   3'- gGUGGCUCCCGcacau--GUG-AACCGCg -5'
6363 3' -55.9 NC_001847.1 + 105051 0.66 0.910229
Target:  5'- gCGCUGGgcgcGGGCGUGUgguaguccccgggcgGCACgcGGCGg -3'
miRNA:   3'- gGUGGCU----CCCGCACA---------------UGUGaaCCGCg -5'
6363 3' -55.9 NC_001847.1 + 2238 0.66 0.910229
Target:  5'- gCGCUGGgcgcGGGCGUGUgguaguccccgggcgGCACgcGGCGg -3'
miRNA:   3'- gGUGGCU----CCCGCACA---------------UGUGaaCCGCg -5'
6363 3' -55.9 NC_001847.1 + 63296 0.66 0.910229
Target:  5'- uCCACCgcugggGAGGGCGUGcu--CUuuuucccggagccgaUGGCGUa -3'
miRNA:   3'- -GGUGG------CUCCCGCACauguGA---------------ACCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.