miRNA display CGI


Results 41 - 60 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 100648 0.71 0.684021
Target:  5'- cGGCGCCAGGgccgCgcugcuGCGGCGgGGGGUCc -3'
miRNA:   3'- cCCGUGGUUCa---G------UGUCGCgUUCCAGc -5'
6363 5' -55 NC_001847.1 + 61791 0.71 0.694265
Target:  5'- cGGGUggGCCGGGUCGCccuGGC-CAuGGUCGa -3'
miRNA:   3'- -CCCG--UGGUUCAGUG---UCGcGUuCCAGC- -5'
6363 5' -55 NC_001847.1 + 28324 0.71 0.694265
Target:  5'- cGGGCGCCGGGcC-CGGCGCcccgcGGGGcCGc -3'
miRNA:   3'- -CCCGUGGUUCaGuGUCGCG-----UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 70322 0.71 0.694265
Target:  5'- cGGCACCAGGUCGUAGUcuaCGAGGUgGc -3'
miRNA:   3'- cCCGUGGUUCAGUGUCGc--GUUCCAgC- -5'
6363 5' -55 NC_001847.1 + 6690 0.71 0.694265
Target:  5'- cGGCcgGCCGGG-CGCGcGCGCAGGGcCGa -3'
miRNA:   3'- cCCG--UGGUUCaGUGU-CGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 131137 0.71 0.694265
Target:  5'- cGGGCGCCGGGcC-CGGCGCcccgcGGGGcCGc -3'
miRNA:   3'- -CCCGUGGUUCaGuGUCGCG-----UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 88236 0.71 0.694265
Target:  5'- cGGaGCCGAGgccggCGCGGCGCGGGG-CGc -3'
miRNA:   3'- cCCgUGGUUCa----GUGUCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 45741 0.71 0.694265
Target:  5'- -aGuCGCCAAuGUC-CAGCGCcGGGUCGg -3'
miRNA:   3'- ccC-GUGGUU-CAGuGUCGCGuUCCAGC- -5'
6363 5' -55 NC_001847.1 + 12435 0.71 0.704455
Target:  5'- cGGGCuCCAAGgcgccggCACAGCGCGcgcGG-CGg -3'
miRNA:   3'- -CCCGuGGUUCa------GUGUCGCGUu--CCaGC- -5'
6363 5' -55 NC_001847.1 + 48631 0.71 0.704455
Target:  5'- cGGGCGCCcAGcCGCcGCGCGAcGGUg- -3'
miRNA:   3'- -CCCGUGGuUCaGUGuCGCGUU-CCAgc -5'
6363 5' -55 NC_001847.1 + 23708 0.7 0.714582
Target:  5'- gGGGCGC--GGUC--GGCGCAgAGGUCGa -3'
miRNA:   3'- -CCCGUGguUCAGugUCGCGU-UCCAGC- -5'
6363 5' -55 NC_001847.1 + 85249 0.7 0.714582
Target:  5'- cGGCGCCAGGU----GCGCGAGGUa- -3'
miRNA:   3'- cCCGUGGUUCAguguCGCGUUCCAgc -5'
6363 5' -55 NC_001847.1 + 17123 0.7 0.714582
Target:  5'- uGGaACCAGgagacGUCGCAGCGCA-GGUUGg -3'
miRNA:   3'- cCCgUGGUU-----CAGUGUCGCGUuCCAGC- -5'
6363 5' -55 NC_001847.1 + 33018 0.7 0.719619
Target:  5'- gGGGCGCgCGGGgcgaggcgcggaCGCGGCGCAggaguuuauugaccGGGUCGc -3'
miRNA:   3'- -CCCGUG-GUUCa-----------GUGUCGCGU--------------UCCAGC- -5'
6363 5' -55 NC_001847.1 + 81946 0.7 0.724637
Target:  5'- cGGCGuCgAGGUgGCGGCGCGccacagccGGGUCGc -3'
miRNA:   3'- cCCGU-GgUUCAgUGUCGCGU--------UCCAGC- -5'
6363 5' -55 NC_001847.1 + 49592 0.7 0.724637
Target:  5'- cGGCGCCuGGgCGCAGCGgGAGcUCGg -3'
miRNA:   3'- cCCGUGGuUCaGUGUCGCgUUCcAGC- -5'
6363 5' -55 NC_001847.1 + 49508 0.7 0.73461
Target:  5'- cGGCGCCGcuUCGCcgGGCGCGGGGcUCc -3'
miRNA:   3'- cCCGUGGUucAGUG--UCGCGUUCC-AGc -5'
6363 5' -55 NC_001847.1 + 130685 0.7 0.744492
Target:  5'- gGGGCGCCGAggacgcggacGUCGCGgaguGCGcCGAGGcCGa -3'
miRNA:   3'- -CCCGUGGUU----------CAGUGU----CGC-GUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 16841 0.7 0.744492
Target:  5'- cGGGCAUCGGG--GCGGCGCucGAGG-CGa -3'
miRNA:   3'- -CCCGUGGUUCagUGUCGCG--UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 27872 0.7 0.744492
Target:  5'- gGGGCGCCGAggacgcggacGUCGCGgaguGCGcCGAGGcCGa -3'
miRNA:   3'- -CCCGUGGUU----------CAGUGU----CGC-GUUCCaGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.