miRNA display CGI


Results 41 - 60 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 113918 0.66 0.920953
Target:  5'- -aGCAgCGAGaggaaGCAGCGCGcGGUCGc -3'
miRNA:   3'- ccCGUgGUUCag---UGUCGCGUuCCAGC- -5'
6363 5' -55 NC_001847.1 + 113435 0.67 0.889632
Target:  5'- cGGCGCCGcguccaaaaucaGGUCACAGCccaUAAGGaUCa -3'
miRNA:   3'- cCCGUGGU------------UCAGUGUCGc--GUUCC-AGc -5'
6363 5' -55 NC_001847.1 + 112071 0.77 0.384947
Target:  5'- aGGGCGCCcucggcgacccggcGGUC-CGGCGCAAGGUgGa -3'
miRNA:   3'- -CCCGUGGu-------------UCAGuGUCGCGUUCCAgC- -5'
6363 5' -55 NC_001847.1 + 111262 0.79 0.290083
Target:  5'- cGGCGCCGGGUCggagGCGGCGCcGGGcCGg -3'
miRNA:   3'- cCCGUGGUUCAG----UGUCGCGuUCCaGC- -5'
6363 5' -55 NC_001847.1 + 109439 0.65 0.931777
Target:  5'- cGGGC-CgcAGUgGCGGCuuacgucgGCGAGGUCGu -3'
miRNA:   3'- -CCCGuGguUCAgUGUCG--------CGUUCCAGC- -5'
6363 5' -55 NC_001847.1 + 107479 0.66 0.926487
Target:  5'- -cGCGCCGcGUCgaGCAGgGCcGGGUCu -3'
miRNA:   3'- ccCGUGGUuCAG--UGUCgCGuUCCAGc -5'
6363 5' -55 NC_001847.1 + 106822 0.68 0.81911
Target:  5'- gGGGCGCCGGGcC-CGGCGCccgccucucgcGGGGcCGc -3'
miRNA:   3'- -CCCGUGGUUCaGuGUCGCG-----------UUCCaGC- -5'
6363 5' -55 NC_001847.1 + 106770 0.74 0.490414
Target:  5'- gGGGCGCCGucUC-CGGCGCGAGGgCGc -3'
miRNA:   3'- -CCCGUGGUucAGuGUCGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 106077 0.67 0.895712
Target:  5'- gGGGCGCCGgcgccgcgcggccGGcgagCACGGCGCGcAGcUCGg -3'
miRNA:   3'- -CCCGUGGU-------------UCa---GUGUCGCGU-UCcAGC- -5'
6363 5' -55 NC_001847.1 + 105710 0.68 0.836196
Target:  5'- cGGCGCCAcgccccAGcgcUCGCuGGCGCGcAGGUCa -3'
miRNA:   3'- cCCGUGGU------UC---AGUG-UCGCGU-UCCAGc -5'
6363 5' -55 NC_001847.1 + 105034 0.66 0.920953
Target:  5'- aGGcCGCCAGcGcCGCGGCGCuGGGcgCGg -3'
miRNA:   3'- cCC-GUGGUU-CaGUGUCGCGuUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 104969 0.66 0.902882
Target:  5'- cGGGCGCCAGGgcUCGgGGaagaGCGGguGGUCc -3'
miRNA:   3'- -CCCGUGGUUC--AGUgUCg---CGUU--CCAGc -5'
6363 5' -55 NC_001847.1 + 104806 0.66 0.920953
Target:  5'- cGGGCAgCGGGUCGuagagcaccacCAcGCGCAcguccucgGGGUCc -3'
miRNA:   3'- -CCCGUgGUUCAGU-----------GU-CGCGU--------UCCAGc -5'
6363 5' -55 NC_001847.1 + 104191 0.68 0.81911
Target:  5'- gGGGCACCGcGcgCGCAGCGCcguuuaugcgAAGGcCu -3'
miRNA:   3'- -CCCGUGGUuCa-GUGUCGCG----------UUCCaGc -5'
6363 5' -55 NC_001847.1 + 104024 0.7 0.758155
Target:  5'- cGGGCGCCAGcUC-CAGCGCGcgccgcccgcaggccAGGUa- -3'
miRNA:   3'- -CCCGUGGUUcAGuGUCGCGU---------------UCCAgc -5'
6363 5' -55 NC_001847.1 + 103384 0.68 0.81911
Target:  5'- -aGCGCCGcGUCucCGGCGCcGGGUCc -3'
miRNA:   3'- ccCGUGGUuCAGu-GUCGCGuUCCAGc -5'
6363 5' -55 NC_001847.1 + 102701 0.67 0.882656
Target:  5'- aGGGCGCCGGGcggGCGGCGaAAGGcCc -3'
miRNA:   3'- -CCCGUGGUUCag-UGUCGCgUUCCaGc -5'
6363 5' -55 NC_001847.1 + 102582 0.69 0.801326
Target:  5'- uGGCguccGCCAGGUCGCccAGCGcCGAGGgcugCGc -3'
miRNA:   3'- cCCG----UGGUUCAGUG--UCGC-GUUCCa---GC- -5'
6363 5' -55 NC_001847.1 + 102436 0.78 0.311236
Target:  5'- cGGGCGCCuug-CACAGCGgGcAGGUCGg -3'
miRNA:   3'- -CCCGUGGuucaGUGUCGCgU-UCCAGC- -5'
6363 5' -55 NC_001847.1 + 101170 0.68 0.860378
Target:  5'- gGGGC-CgGGGUCGgGGCGC--GGUCu -3'
miRNA:   3'- -CCCGuGgUUCAGUgUCGCGuuCCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.