miRNA display CGI


Results 41 - 60 of 248 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6363 5' -55 NC_001847.1 + 122124 0.69 0.782912
Target:  5'- -cGCugCAGGUCGCGacggccggcGCGCAGGG-CGc -3'
miRNA:   3'- ccCGugGUUCAGUGU---------CGCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 100523 0.71 0.673734
Target:  5'- uGGGCugCGGGUCGCGGagugGguGGG-CGg -3'
miRNA:   3'- -CCCGugGUUCAGUGUCg---CguUCCaGC- -5'
6363 5' -55 NC_001847.1 + 134901 0.8 0.257361
Target:  5'- uGGGCGCCGGgcGUCGgGGCGCGAGGccCGg -3'
miRNA:   3'- -CCCGUGGUU--CAGUgUCGCGUUCCa-GC- -5'
6363 5' -55 NC_001847.1 + 114743 0.69 0.773492
Target:  5'- cGGUGCCGgcGGUCGCGGuCGC--GGUCGc -3'
miRNA:   3'- cCCGUGGU--UCAGUGUC-GCGuuCCAGC- -5'
6363 5' -55 NC_001847.1 + 3427 0.82 0.181663
Target:  5'- gGGGCGCCAGG-CGCAGCcCAggGGGUCGa -3'
miRNA:   3'- -CCCGUGGUUCaGUGUCGcGU--UCCAGC- -5'
6363 5' -55 NC_001847.1 + 8110 0.68 0.85252
Target:  5'- cGGCGCCAg--CGCAgGCGCGGGGcCc -3'
miRNA:   3'- cCCGUGGUucaGUGU-CGCGUUCCaGc -5'
6363 5' -55 NC_001847.1 + 102436 0.78 0.311236
Target:  5'- cGGGCGCCuug-CACAGCGgGcAGGUCGg -3'
miRNA:   3'- -CCCGUGGuucaGUGUCGCgU-UCCAGC- -5'
6363 5' -55 NC_001847.1 + 68846 0.68 0.847707
Target:  5'- cGGGCGCUGAGUUAaauCGGCGCcuacucgcgccgcccGGGaGUCGc -3'
miRNA:   3'- -CCCGUGGUUCAGU---GUCGCG---------------UUC-CAGC- -5'
6363 5' -55 NC_001847.1 + 6957 0.68 0.844458
Target:  5'- aGGCGCgGGGUCGCGGCgGCGcuuccgcccgcGGGcCGc -3'
miRNA:   3'- cCCGUGgUUCAGUGUCG-CGU-----------UCCaGC- -5'
6363 5' -55 NC_001847.1 + 16835 0.68 0.836196
Target:  5'- cGGGUAgCC-AGUgGCGGUGCAGGuguaGUCGa -3'
miRNA:   3'- -CCCGU-GGuUCAgUGUCGCGUUC----CAGC- -5'
6363 5' -55 NC_001847.1 + 41070 0.68 0.822585
Target:  5'- cGGGCAgCAAGUCccgcagggugucgggGgugaugguagcCGGCGCAcuaGGGUCGa -3'
miRNA:   3'- -CCCGUgGUUCAG---------------U-----------GUCGCGU---UCCAGC- -5'
6363 5' -55 NC_001847.1 + 126242 0.69 0.810301
Target:  5'- gGGGCGuCCGGGgucgucggCGgGGCGUccGGGGUCGu -3'
miRNA:   3'- -CCCGU-GGUUCa-------GUgUCGCG--UUCCAGC- -5'
6363 5' -55 NC_001847.1 + 70286 0.69 0.792193
Target:  5'- -cGCGCCuggcgGGGUCGCGGCGCGccgcgcuGGUCu -3'
miRNA:   3'- ccCGUGG-----UUCAGUGUCGCGUu------CCAGc -5'
6363 5' -55 NC_001847.1 + 134943 0.7 0.763943
Target:  5'- cGGGCGCCGGGggCGgGG-GCGGGGgCGg -3'
miRNA:   3'- -CCCGUGGUUCa-GUgUCgCGUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 130685 0.7 0.744492
Target:  5'- gGGGCGCCGAggacgcggacGUCGCGgaguGCGcCGAGGcCGa -3'
miRNA:   3'- -CCCGUGGUU----------CAGUGU----CGC-GUUCCaGC- -5'
6363 5' -55 NC_001847.1 + 12435 0.71 0.704455
Target:  5'- cGGGCuCCAAGgcgccggCACAGCGCGcgcGG-CGg -3'
miRNA:   3'- -CCCGuGGUUCa------GUGUCGCGUu--CCaGC- -5'
6363 5' -55 NC_001847.1 + 45741 0.71 0.694265
Target:  5'- -aGuCGCCAAuGUC-CAGCGCcGGGUCGg -3'
miRNA:   3'- ccC-GUGGUU-CAGuGUCGCGuUCCAGC- -5'
6363 5' -55 NC_001847.1 + 34286 0.72 0.62195
Target:  5'- uGGGCGCCGcGcUCGCGGCcgucaGCGAGGcuUCGg -3'
miRNA:   3'- -CCCGUGGUuC-AGUGUCG-----CGUUCC--AGC- -5'
6363 5' -55 NC_001847.1 + 23787 0.74 0.529833
Target:  5'- cGGGCGCgAGGUCGCccAGCGCGGcGGcCa -3'
miRNA:   3'- -CCCGUGgUUCAGUG--UCGCGUU-CCaGc -5'
6363 5' -55 NC_001847.1 + 89887 0.75 0.434026
Target:  5'- gGGGCGCCuucGGggaCGCGGCGCccGAGGUUGu -3'
miRNA:   3'- -CCCGUGGu--UCa--GUGUCGCG--UUCCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.