miRNA display CGI


Results 41 - 60 of 391 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6365 5' -58.6 NC_001847.1 + 121475 0.74 0.337856
Target:  5'- gCGCGGCUcg--UGGuUCCACaCCGCGCc -3'
miRNA:   3'- -GCGCCGGuagaACCuAGGUG-GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 120985 0.74 0.361621
Target:  5'- gCGCGGCCGUCgcccuagcggCCGCCCagGCGCg -3'
miRNA:   3'- -GCGCCGGUAGaaccua----GGUGGG--CGCG- -5'
6365 5' -58.6 NC_001847.1 + 119888 0.69 0.588509
Target:  5'- uGCGGCgAUCgcgugcgUGGccgccgccgCCGCCgGCGCg -3'
miRNA:   3'- gCGCCGgUAGa------ACCua-------GGUGGgCGCG- -5'
6365 5' -58.6 NC_001847.1 + 119580 0.66 0.793763
Target:  5'- uGCcGCCGaUggGGGUUCcCCCGCGCc -3'
miRNA:   3'- gCGcCGGUaGaaCCUAGGuGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 119561 0.67 0.728334
Target:  5'- gCGCGGCCAgacUCUgcgGGcagcggcggCCGCggcccgacggCCGCGCg -3'
miRNA:   3'- -GCGCCGGU---AGAa--CCua-------GGUG----------GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 119366 0.68 0.695934
Target:  5'- gCGCGGCg--CUUGccgccggcgaaagcGggCCGCCCGCGUc -3'
miRNA:   3'- -GCGCCGguaGAAC--------------CuaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 119272 0.67 0.708782
Target:  5'- gCGCGGCuCGUCgaGGG-CCAguaCCGaCGCg -3'
miRNA:   3'- -GCGCCG-GUAGaaCCUaGGUg--GGC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 118821 0.67 0.708782
Target:  5'- uGCGGUgAgCUUGccuaCACCCGCGCc -3'
miRNA:   3'- gCGCCGgUaGAACcuagGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 118413 0.66 0.784772
Target:  5'- uCGUGGCCGUCgccUGcGGUCUcgGCgCCGUGg -3'
miRNA:   3'- -GCGCCGGUAGa--AC-CUAGG--UG-GGCGCg -5'
6365 5' -58.6 NC_001847.1 + 118207 0.66 0.784772
Target:  5'- aCGaGGCCcugcgaaacgcAUCgcUGGAgugcaacucCCGCCCGCGCg -3'
miRNA:   3'- -GCgCCGG-----------UAGa-ACCUa--------GGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 117831 0.68 0.697916
Target:  5'- aCGCGGCCGUgUgccGcgCCGCcgaguacuacccgCCGCGCu -3'
miRNA:   3'- -GCGCCGGUAgAac-CuaGGUG-------------GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 117276 0.71 0.500373
Target:  5'- gGCcGCCGUUUUGGggCgC-CCCGCGCc -3'
miRNA:   3'- gCGcCGGUAGAACCuaG-GuGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 116900 1.12 0.00102
Target:  5'- uCGCGGCCAUCUUGGAUCCACCCGCGCg -3'
miRNA:   3'- -GCGCCGGUAGAACCUAGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 116165 0.71 0.481539
Target:  5'- gGCGGCCGcg--GGcgCCGCggCCGCGCu -3'
miRNA:   3'- gCGCCGGUagaaCCuaGGUG--GGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 116137 0.7 0.548773
Target:  5'- gCGaagaGGCCGag--GGcgCCGCCCGUGCg -3'
miRNA:   3'- -GCg---CCGGUagaaCCuaGGUGGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 115884 0.67 0.757035
Target:  5'- cCGcCGGCCAgaaccGGUCCGCCgGaCGCg -3'
miRNA:   3'- -GC-GCCGGUagaacCUAGGUGGgC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 115843 0.66 0.811313
Target:  5'- cCGCGGCCGcgcucguuUgUUGG--CgGCCCGcCGCa -3'
miRNA:   3'- -GCGCCGGU--------AgAACCuaGgUGGGC-GCG- -5'
6365 5' -58.6 NC_001847.1 + 115580 0.67 0.747563
Target:  5'- cCGCGGCgAUCgcgGGcGUCgAUCgCGUGCg -3'
miRNA:   3'- -GCGCCGgUAGaa-CC-UAGgUGG-GCGCG- -5'
6365 5' -58.6 NC_001847.1 + 114691 0.71 0.500373
Target:  5'- cCGCGGCCugc-UGGAcgCCuuCCGCGCc -3'
miRNA:   3'- -GCGCCGGuagaACCUa-GGugGGCGCG- -5'
6365 5' -58.6 NC_001847.1 + 114597 0.66 0.799974
Target:  5'- aCGUGGCCGUCcccgccgagaagUucacguccuuccagUGGGcccCCGCCCGCGa -3'
miRNA:   3'- -GCGCCGGUAG------------A--------------ACCUa--GGUGGGCGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.