miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6367 3' -52.1 NC_001847.1 + 134169 0.66 0.972155
Target:  5'- gUGCGGGCcGgcGCau-AGAcgCCCGGCg -3'
miRNA:   3'- -ACGUCCGuCaaCGguuUCUa-GGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 64269 0.66 0.972155
Target:  5'- cGCAGGCGGUUuGUac-AGc-CCCAGCg -3'
miRNA:   3'- aCGUCCGUCAA-CGguuUCuaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 47525 0.66 0.972155
Target:  5'- cGCAGccCGGgcGCCAAAGccgccGUCUCAACg -3'
miRNA:   3'- aCGUCc-GUCaaCGGUUUC-----UAGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 29506 0.66 0.972155
Target:  5'- cGCGGGCGGcgcuucgGCCGcAGAgcucgCCCGcGCg -3'
miRNA:   3'- aCGUCCGUCaa-----CGGUuUCUa----GGGU-UG- -5'
6367 3' -52.1 NC_001847.1 + 31108 0.66 0.969111
Target:  5'- gGCAGcGCGGUggcaUGCCuucGGUCCUcGCu -3'
miRNA:   3'- aCGUC-CGUCA----ACGGuuuCUAGGGuUG- -5'
6367 3' -52.1 NC_001847.1 + 63138 0.66 0.969111
Target:  5'- aGC-GGCuGUgGCaccGGAUCCCGGCg -3'
miRNA:   3'- aCGuCCGuCAaCGguuUCUAGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 43914 0.66 0.967829
Target:  5'- cUGCAGGCGGaccCCGAAGuguuguucgcauuUUCCGACg -3'
miRNA:   3'- -ACGUCCGUCaacGGUUUCu------------AGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 23967 0.66 0.967175
Target:  5'- gGCGuuGGUGGUUGCCAuGGGccggcuuggcgccagUCCCAGa -3'
miRNA:   3'- aCGU--CCGUCAACGGUuUCU---------------AGGGUUg -5'
6367 3' -52.1 NC_001847.1 + 126780 0.66 0.967175
Target:  5'- gGCGuuGGUGGUUGCCAuGGGccggcuuggcgccagUCCCAGa -3'
miRNA:   3'- aCGU--CCGUCAACGGUuUCU---------------AGGGUUg -5'
6367 3' -52.1 NC_001847.1 + 15145 0.66 0.965837
Target:  5'- gGCAGcGCGcuguaguugacGUUGCCAAAGG--CCGGCa -3'
miRNA:   3'- aCGUC-CGU-----------CAACGGUUUCUagGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 22121 0.66 0.965837
Target:  5'- aGCGGGCGc--GCCcuGGG-CCCGGCg -3'
miRNA:   3'- aCGUCCGUcaaCGGuuUCUaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 42741 0.66 0.965837
Target:  5'- cGCGGGCGGcgggGCgGAcagcAGAUCCagGACg -3'
miRNA:   3'- aCGUCCGUCaa--CGgUU----UCUAGGg-UUG- -5'
6367 3' -52.1 NC_001847.1 + 124934 0.66 0.965837
Target:  5'- aGCGGGCGc--GCCcuGGG-CCCGGCg -3'
miRNA:   3'- aCGUCCGUcaaCGGuuUCUaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 60845 0.66 0.962326
Target:  5'- cGCGGcGCugcgcGgcGCCAGGGcgUCCAGCg -3'
miRNA:   3'- aCGUC-CGu----CaaCGGUUUCuaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 127294 0.66 0.962326
Target:  5'- cUGCAGGCGccaccGgcggUGCCGGAGAcacggcgaCCGGCg -3'
miRNA:   3'- -ACGUCCGU-----Ca---ACGGUUUCUag------GGUUG- -5'
6367 3' -52.1 NC_001847.1 + 78371 0.66 0.961226
Target:  5'- gGCGGGCGGgcaaucgcggcgcaUgGCCGAGGAcCCCGccGCu -3'
miRNA:   3'- aCGUCCGUC--------------AaCGGUUUCUaGGGU--UG- -5'
6367 3' -52.1 NC_001847.1 + 1107 0.66 0.958572
Target:  5'- cGCGGGCGGcgccGCCGcGGccUCCAGCa -3'
miRNA:   3'- aCGUCCGUCaa--CGGUuUCuaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 103920 0.66 0.958572
Target:  5'- cGCGGGCGGcgccGCCGcGGccUCCAGCa -3'
miRNA:   3'- aCGUCCGUCaa--CGGUuUCuaGGGUUG- -5'
6367 3' -52.1 NC_001847.1 + 48201 0.66 0.958572
Target:  5'- cGCcGGCGGccaggGCCGAGGAgCgCAGCg -3'
miRNA:   3'- aCGuCCGUCaa---CGGUUUCUaGgGUUG- -5'
6367 3' -52.1 NC_001847.1 + 27025 0.66 0.958572
Target:  5'- cGCAGGCGGcUGCCAgaaaggaaaAGGAUacaagagaggcCCgCAGCc -3'
miRNA:   3'- aCGUCCGUCaACGGU---------UUCUA-----------GG-GUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.