miRNA display CGI


Results 1 - 20 of 158 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6367 5' -54.8 NC_001847.1 + 125109 0.66 0.931938
Target:  5'- -cGUUCGCGg--CGGCGagaaGCCCGg-- -3'
miRNA:   3'- caUAAGCGUaugGCCGCg---CGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 98154 0.66 0.931938
Target:  5'- gGUGUUaagcagcaGCAcGCCgcGGCGCGCCCa--- -3'
miRNA:   3'- -CAUAAg-------CGUaUGG--CCGCGCGGGcaac -5'
6367 5' -54.8 NC_001847.1 + 109147 0.66 0.931938
Target:  5'- ----gUGCGcGCCuGCGCGCCCGc-- -3'
miRNA:   3'- cauaaGCGUaUGGcCGCGCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 71082 0.66 0.931938
Target:  5'- ----gCGCucgGCCGGCGCGgCCa--- -3'
miRNA:   3'- cauaaGCGua-UGGCCGCGCgGGcaac -5'
6367 5' -54.8 NC_001847.1 + 62645 0.66 0.931938
Target:  5'- -----gGCGUACuCGGCGaGCCCGg-- -3'
miRNA:   3'- cauaagCGUAUG-GCCGCgCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 69485 0.66 0.931938
Target:  5'- ----gCGCgaugGUGCgGGCGCGCacgcggCCGUUGg -3'
miRNA:   3'- cauaaGCG----UAUGgCCGCGCG------GGCAAC- -5'
6367 5' -54.8 NC_001847.1 + 6334 0.66 0.931938
Target:  5'- ----gUGCGcGCCuGCGCGCCCGc-- -3'
miRNA:   3'- cauaaGCGUaUGGcCGCGCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 103504 0.66 0.928785
Target:  5'- uGUGUUCGCAcagacucgucuuuauUGCCGccguCGCGCCCc--- -3'
miRNA:   3'- -CAUAAGCGU---------------AUGGCc---GCGCGGGcaac -5'
6367 5' -54.8 NC_001847.1 + 691 0.66 0.928785
Target:  5'- uGUGUUCGCAcagacucgucuuuauUGCCGccguCGCGCCCc--- -3'
miRNA:   3'- -CAUAAGCGU---------------AUGGCc---GCGCGGGcaac -5'
6367 5' -54.8 NC_001847.1 + 104625 0.66 0.928785
Target:  5'- ---gUCGCGcucGCCGGCacugucgucuagcgcGCGCCCGa-- -3'
miRNA:   3'- cauaAGCGUa--UGGCCG---------------CGCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 11545 0.66 0.926634
Target:  5'- -cGUUCGCGU-CUGGaguGCGCCCa--- -3'
miRNA:   3'- caUAAGCGUAuGGCCg--CGCGGGcaac -5'
6367 5' -54.8 NC_001847.1 + 31015 0.66 0.926634
Target:  5'- -----gGCGuUGCCGGCGCGCgCGc-- -3'
miRNA:   3'- cauaagCGU-AUGGCCGCGCGgGCaac -5'
6367 5' -54.8 NC_001847.1 + 113022 0.66 0.926634
Target:  5'- ----cCGCcggGCCcagGGCGCGCCCGc-- -3'
miRNA:   3'- cauaaGCGua-UGG---CCGCGCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 33180 0.66 0.926634
Target:  5'- -----aGCGgcugGCCGGCucuGCGCCCGa-- -3'
miRNA:   3'- cauaagCGUa---UGGCCG---CGCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 83907 0.66 0.926634
Target:  5'- ---aUCgGCcgGCagCGGCGCGCCCGc-- -3'
miRNA:   3'- cauaAG-CGuaUG--GCCGCGCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 116721 0.66 0.926634
Target:  5'- ---cUgGCAUACCcGCGCGCgCUGUUc -3'
miRNA:   3'- cauaAgCGUAUGGcCGCGCG-GGCAAc -5'
6367 5' -54.8 NC_001847.1 + 104121 0.66 0.926634
Target:  5'- -----gGCGuUGCCGGCGCGCgCGc-- -3'
miRNA:   3'- cauaagCGU-AUGGCCGCGCGgGCaac -5'
6367 5' -54.8 NC_001847.1 + 88704 0.66 0.926634
Target:  5'- ----gCGCAUccccACCGcCGCGCCCGa-- -3'
miRNA:   3'- cauaaGCGUA----UGGCcGCGCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 10209 0.66 0.926634
Target:  5'- ----cCGCcggGCCcagGGCGCGCCCGc-- -3'
miRNA:   3'- cauaaGCGua-UGG---CCGCGCGGGCaac -5'
6367 5' -54.8 NC_001847.1 + 30698 0.66 0.921081
Target:  5'- ----aCGUGUACCuGCGCGCCgCGg-- -3'
miRNA:   3'- cauaaGCGUAUGGcCGCGCGG-GCaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.