miRNA display CGI


Results 1 - 20 of 506 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6369 5' -60.7 NC_001847.1 + 118482 0.66 0.698908
Target:  5'- -aGGCCCgGGCG-CGCCuguaGGCGCGg-- -3'
miRNA:   3'- acUCGGGgUCGCuGCGG----UCGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 131904 0.66 0.698908
Target:  5'- --uGCCgCCGGCGA-GCaCGGCGCGggCGg -3'
miRNA:   3'- acuCGG-GGUCGCUgCG-GUCGUGCa-GC- -5'
6369 5' -60.7 NC_001847.1 + 45859 0.66 0.698908
Target:  5'- cGAgGCCUCGgccGCGGCGCgcgaaaCAGCGuCGUCGu -3'
miRNA:   3'- aCU-CGGGGU---CGCUGCG------GUCGU-GCAGC- -5'
6369 5' -60.7 NC_001847.1 + 43139 0.66 0.698908
Target:  5'- cGGGCCCgCgGGCGcuGCGCCcGCA-GUCGc -3'
miRNA:   3'- aCUCGGG-G-UCGC--UGCGGuCGUgCAGC- -5'
6369 5' -60.7 NC_001847.1 + 120845 0.66 0.698908
Target:  5'- gGAGCggggCC-GCGACGCCGGagaGgGUCGa -3'
miRNA:   3'- aCUCGg---GGuCGCUGCGGUCg--UgCAGC- -5'
6369 5' -60.7 NC_001847.1 + 75484 0.66 0.698908
Target:  5'- aGAGgCCgucgaGGCGGCGCCGguGCACGg-- -3'
miRNA:   3'- aCUCgGGg----UCGCUGCGGU--CGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 53260 0.66 0.698908
Target:  5'- --cGCCUCGGCGgggcgcugcGCGCCcaggcGCGCGUCc -3'
miRNA:   3'- acuCGGGGUCGC---------UGCGGu----CGUGCAGc -5'
6369 5' -60.7 NC_001847.1 + 51571 0.66 0.698908
Target:  5'- aGcGCUUCcGCGGCGCCggGGCAgcCGUCGg -3'
miRNA:   3'- aCuCGGGGuCGCUGCGG--UCGU--GCAGC- -5'
6369 5' -60.7 NC_001847.1 + 57680 0.66 0.698908
Target:  5'- cGGGCgCCCGGCGcccGCcCCAGCcCGcCGa -3'
miRNA:   3'- aCUCG-GGGUCGC---UGcGGUCGuGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 105077 0.66 0.698908
Target:  5'- -cAGCacuCCCAGCcgcgccaccGCGCCGGCaACGUCGc -3'
miRNA:   3'- acUCG---GGGUCGc--------UGCGGUCG-UGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 91814 0.66 0.698908
Target:  5'- cGcGCCgCgCGGCGAUGgCAGCACGgcagCGc -3'
miRNA:   3'- aCuCGG-G-GUCGCUGCgGUCGUGCa---GC- -5'
6369 5' -60.7 NC_001847.1 + 82127 0.66 0.698908
Target:  5'- cGAGCgCgCAGCGGcCGCC-GC-UGUCGg -3'
miRNA:   3'- aCUCGgG-GUCGCU-GCGGuCGuGCAGC- -5'
6369 5' -60.7 NC_001847.1 + 66057 0.66 0.698908
Target:  5'- --cGUCCgCGcGCGGCGCCAGaCGCGgCGa -3'
miRNA:   3'- acuCGGG-GU-CGCUGCGGUC-GUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 29091 0.66 0.698908
Target:  5'- --uGCCgCCGGCGA-GCaCGGCGCGggCGg -3'
miRNA:   3'- acuCGG-GGUCGCUgCG-GUCGUGCa-GC- -5'
6369 5' -60.7 NC_001847.1 + 134742 0.66 0.696941
Target:  5'- cGGGCCCUcggucucggucggAGCGcgguccgGCGCgCGGCGCG-CGg -3'
miRNA:   3'- aCUCGGGG-------------UCGC-------UGCG-GUCGUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 68839 0.66 0.695957
Target:  5'- aGGGCCCCGGgcgcugaguuaaauCGGCGCCuacuCGCGcCGc -3'
miRNA:   3'- aCUCGGGGUC--------------GCUGCGGuc--GUGCaGC- -5'
6369 5' -60.7 NC_001847.1 + 45348 0.66 0.689054
Target:  5'- --uGCCaCGGCGuuCGCCAGCGCGa-- -3'
miRNA:   3'- acuCGGgGUCGCu-GCGGUCGUGCagc -5'
6369 5' -60.7 NC_001847.1 + 55561 0.66 0.689054
Target:  5'- ---uUCCCGGaCGGCGCCcgcAGCACGaUCGu -3'
miRNA:   3'- acucGGGGUC-GCUGCGG---UCGUGC-AGC- -5'
6369 5' -60.7 NC_001847.1 + 65804 0.66 0.689054
Target:  5'- -cAGCaCCAGCGcCGCCAGCAgCGccCGa -3'
miRNA:   3'- acUCGgGGUCGCuGCGGUCGU-GCa-GC- -5'
6369 5' -60.7 NC_001847.1 + 80777 0.66 0.689054
Target:  5'- --cGCCgCAGCagcuCGCgCAGCGCGUCc -3'
miRNA:   3'- acuCGGgGUCGcu--GCG-GUCGUGCAGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.