Results 1 - 20 of 394 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
6370 | 5' | -60.4 | NC_001847.1 | + | 86378 | 0.66 | 0.711404 |
Target: 5'- gGCGGCggGCCGcGGcGGCGgGcGCGCGGCUg -3' miRNA: 3'- -UGCUG--CGGU-UC-CUGCaC-CGCGCCGAg -5' |
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6370 | 5' | -60.4 | NC_001847.1 | + | 73717 | 0.66 | 0.711404 |
Target: 5'- gGCGGCgcgGCCGcGGGCGUcgagGGC-CGGCUg -3' miRNA: 3'- -UGCUG---CGGUuCCUGCA----CCGcGCCGAg -5' |
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6370 | 5' | -60.4 | NC_001847.1 | + | 53806 | 0.66 | 0.711404 |
Target: 5'- cCGcACGUgCAAGGcgugucGCG-GGCGCGGCUg -3' miRNA: 3'- uGC-UGCG-GUUCC------UGCaCCGCGCCGAg -5' |
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6370 | 5' | -60.4 | NC_001847.1 | + | 69234 | 0.66 | 0.711404 |
Target: 5'- cCGGCGCCGcGGcaACGcUGGCcuacuacgcGCGGCUg -3' miRNA: 3'- uGCUGCGGUuCC--UGC-ACCG---------CGCCGAg -5' |
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6370 | 5' | -60.4 | NC_001847.1 | + | 32620 | 0.66 | 0.711404 |
Target: 5'- -gGACGCgauCAccGGCGcGGCGCGcGCUCu -3' miRNA: 3'- ugCUGCG---GUucCUGCaCCGCGC-CGAG- -5' |
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6370 | 5' | -60.4 | NC_001847.1 | + | 52760 | 0.66 | 0.711404 |
Target: 5'- cCGAUGaCCAgcccgcAGGucACGcGGCGCGcGCUCa -3' miRNA: 3'- uGCUGC-GGU------UCC--UGCaCCGCGC-CGAG- -5' |
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6370 | 5' | -60.4 | NC_001847.1 | + | 76715 | 0.66 | 0.711404 |
Target: 5'- gGCG-CGCCGggaAGGACGgucgGGCGgGGa-- -3' miRNA: 3'- -UGCuGCGGU---UCCUGCa---CCGCgCCgag -5' |
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6370 | 5' | -60.4 | NC_001847.1 | + | 132143 | 0.66 | 0.711404 |
Target: 5'- gGCGGCGCugcugccgcgCAGGGugG-GGC-CGGCg- -3' miRNA: 3'- -UGCUGCG----------GUUCCugCaCCGcGCCGag -5' |
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6370 | 5' | -60.4 | NC_001847.1 | + | 59725 | 0.66 | 0.711404 |
Target: 5'- cGCGAuCGCgCucGG-CGUccGGCGCGaGCUCg -3' miRNA: 3'- -UGCU-GCG-GuuCCuGCA--CCGCGC-CGAG- -5' |
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6370 | 5' | -60.4 | NC_001847.1 | + | 130843 | 0.66 | 0.711404 |
Target: 5'- gGCGGCGCgCGAGuaccaaGGCGccGGCGCGcGcCUCg -3' miRNA: 3'- -UGCUGCG-GUUC------CUGCa-CCGCGC-C-GAG- -5' |
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6370 | 5' | -60.4 | NC_001847.1 | + | 81194 | 0.66 | 0.710426 |
Target: 5'- gGCGGCGCCAGccGGCGcGcGCGUagaugcaGGCUCg -3' miRNA: 3'- -UGCUGCGGUUc-CUGCaC-CGCG-------CCGAG- -5' |
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6370 | 5' | -60.4 | NC_001847.1 | + | 91662 | 0.66 | 0.701593 |
Target: 5'- gGCGGCGCgGcGGGACGcgauCGCGcGCUCg -3' miRNA: 3'- -UGCUGCGgU-UCCUGCacc-GCGC-CGAG- -5' |
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6370 | 5' | -60.4 | NC_001847.1 | + | 128805 | 0.66 | 0.701593 |
Target: 5'- cGCGGuugcCGCCGGGGcacccgcguACGUGGCcGCGcGCaUCg -3' miRNA: 3'- -UGCU----GCGGUUCC---------UGCACCG-CGC-CG-AG- -5' |
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6370 | 5' | -60.4 | NC_001847.1 | + | 128102 | 0.66 | 0.701593 |
Target: 5'- gGCGAaaGCCcaaacGACGUGGCGCuGGCg- -3' miRNA: 3'- -UGCUg-CGGuuc--CUGCACCGCG-CCGag -5' |
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6370 | 5' | -60.4 | NC_001847.1 | + | 22467 | 0.66 | 0.701593 |
Target: 5'- gGCGGCaggaGCCGucgcAGGugGggcaaggcUGGcCGUGGCUCa -3' miRNA: 3'- -UGCUG----CGGU----UCCugC--------ACC-GCGCCGAG- -5' |
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6370 | 5' | -60.4 | NC_001847.1 | + | 68784 | 0.66 | 0.701593 |
Target: 5'- uCGGCGCCAcgGGGACGaucGCcacgGCGGCg- -3' miRNA: 3'- uGCUGCGGU--UCCUGCac-CG----CGCCGag -5' |
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6370 | 5' | -60.4 | NC_001847.1 | + | 115581 | 0.66 | 0.701593 |
Target: 5'- cGCGGCGaUCGcGGGCGUcgaucGcGUGCGGCUUg -3' miRNA: 3'- -UGCUGC-GGUuCCUGCA-----C-CGCGCCGAG- -5' |
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6370 | 5' | -60.4 | NC_001847.1 | + | 30476 | 0.66 | 0.701593 |
Target: 5'- uGCaGCGCU-GGGACGcgaucGGCGCGGCccUCg -3' miRNA: 3'- -UGcUGCGGuUCCUGCa----CCGCGCCG--AG- -5' |
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6370 | 5' | -60.4 | NC_001847.1 | + | 18952 | 0.66 | 0.701593 |
Target: 5'- cGCGGCGuCCGGGcGGCGacgaccaGCGCGGC-Cg -3' miRNA: 3'- -UGCUGC-GGUUC-CUGCac-----CGCGCCGaG- -5' |
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6370 | 5' | -60.4 | NC_001847.1 | + | 74849 | 0.66 | 0.701593 |
Target: 5'- --uGCGCUuuAGGGGCGgcugUGGUGgCGGCUCc -3' miRNA: 3'- ugcUGCGG--UUCCUGC----ACCGC-GCCGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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