miRNA display CGI


Results 1 - 20 of 113 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6371 3' -59.1 NC_001847.1 + 47424 0.65 0.769055
Target:  5'- cGGCGUCUGcgacgucGUCGGCUUCgccgccgccgcgGCGCCGc -3'
miRNA:   3'- cUCGCGGAC-------UAGCUGGAGa-----------CGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 50036 0.66 0.766252
Target:  5'- -cGCGCCgUGAUgaucaaccuggccggCGGCCUgCUGgCGCUGAu -3'
miRNA:   3'- cuCGCGG-ACUA---------------GCUGGA-GAC-GCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 90542 0.66 0.762498
Target:  5'- cGGCGcCCUGG-CGGcCCUCgccGCGCgCGAg -3'
miRNA:   3'- cUCGC-GGACUaGCU-GGAGa--CGCG-GCU- -5'
6371 3' -59.1 NC_001847.1 + 113510 0.66 0.762498
Target:  5'- -cGCGCCcggGcgCGGCC-C-GCGCCGGc -3'
miRNA:   3'- cuCGCGGa--CuaGCUGGaGaCGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 75538 0.66 0.762498
Target:  5'- cGGCGCaCcGcgCGAUCUCgGCGgCCGAg -3'
miRNA:   3'- cUCGCG-GaCuaGCUGGAGaCGC-GGCU- -5'
6371 3' -59.1 NC_001847.1 + 50121 0.66 0.762498
Target:  5'- aGAGCGCC-GGcUGGCCUCggugaugGCGgCGGa -3'
miRNA:   3'- -CUCGCGGaCUaGCUGGAGa------CGCgGCU- -5'
6371 3' -59.1 NC_001847.1 + 101464 0.66 0.762498
Target:  5'- cGAGCGCCUG--CG-CCUCUagccccGCGCgGGc -3'
miRNA:   3'- -CUCGCGGACuaGCuGGAGA------CGCGgCU- -5'
6371 3' -59.1 NC_001847.1 + 114976 0.66 0.762498
Target:  5'- -cGCGCCc-GUUG-CCUgaGCGCCGAg -3'
miRNA:   3'- cuCGCGGacUAGCuGGAgaCGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 10697 0.66 0.762498
Target:  5'- -cGCGCCcggGcgCGGCC-C-GCGCCGGc -3'
miRNA:   3'- cuCGCGGa--CuaGCUGGaGaCGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 43799 0.66 0.761556
Target:  5'- cGGGCGCgcuacuaCUGAcgcUCGACggCcGCGCCGAa -3'
miRNA:   3'- -CUCGCG-------GACU---AGCUGgaGaCGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 32560 0.66 0.761556
Target:  5'- cGGCG-CUGggCGACCUggcggacgccaagCUGCGCCu- -3'
miRNA:   3'- cUCGCgGACuaGCUGGA-------------GACGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 47768 0.66 0.75967
Target:  5'- cAGCaGCUUGuagucgggccacgcGUCGGCCUCgGCGCCc- -3'
miRNA:   3'- cUCG-CGGAC--------------UAGCUGGAGaCGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 77821 0.66 0.753034
Target:  5'- cGGCGCgUGc-CGGCCUUuuUGCGCCa- -3'
miRNA:   3'- cUCGCGgACuaGCUGGAG--ACGCGGcu -5'
6371 3' -59.1 NC_001847.1 + 76375 0.66 0.753034
Target:  5'- cGGuCGCCUcuucaCGGCCUCgggggggGCGCCGGg -3'
miRNA:   3'- cUC-GCGGAcua--GCUGGAGa------CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 104867 0.66 0.753034
Target:  5'- cAGCGCUUGuGUCG---UCUGCGCCGc -3'
miRNA:   3'- cUCGCGGAC-UAGCuggAGACGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 98885 0.66 0.753034
Target:  5'- -uGCGCCUGggCGGCC-CaG-GCCGGg -3'
miRNA:   3'- cuCGCGGACuaGCUGGaGaCgCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 100889 0.66 0.753034
Target:  5'- -cGCGCC-GGUCugcGCCUC-GCGCCGc -3'
miRNA:   3'- cuCGCGGaCUAGc--UGGAGaCGCGGCu -5'
6371 3' -59.1 NC_001847.1 + 106790 0.66 0.751129
Target:  5'- aGGGCGCCgGGggcccgggcgcgCGGCCccgCgggGCGCCGGg -3'
miRNA:   3'- -CUCGCGGaCUa-----------GCUGGa--Ga--CGCGGCU- -5'
6371 3' -59.1 NC_001847.1 + 123061 0.66 0.747306
Target:  5'- cGGGCGCCgGAcccgcggcgcuccgCGGCCUCgGCGuCCGc -3'
miRNA:   3'- -CUCGCGGaCUa-------------GCUGGAGaCGC-GGCu -5'
6371 3' -59.1 NC_001847.1 + 3978 0.66 0.743467
Target:  5'- aGGGCGCCgGGggccgggcgcgCGGCCccgCgggGCGCCGGg -3'
miRNA:   3'- -CUCGCGGaCUa----------GCUGGa--Ga--CGCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.