miRNA display CGI


Results 1 - 20 of 406 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6375 3' -58.5 NC_001847.1 + 80472 0.65 0.803125
Target:  5'- cCGCCGuCGGGcCGCgcuccccguuCCGCAGCGc -3'
miRNA:   3'- aGCGGC-GCUCaGUGaac-------GGCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 30865 0.65 0.802242
Target:  5'- cUCGCCGaaguCGAuggcguuugcgccaGUCGCccgGCCGCAGCc- -3'
miRNA:   3'- -AGCGGC----GCU--------------CAGUGaa-CGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 83816 0.66 0.796014
Target:  5'- cCGCCGUugagcaGGUCAUgaagcgccGCCGCAGCa- -3'
miRNA:   3'- aGCGGCGc-----UCAGUGaa------CGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 102286 0.66 0.796014
Target:  5'- cCGCCGUGAgGUCGauggGCC-CGGCGu -3'
miRNA:   3'- aGCGGCGCU-CAGUgaa-CGGcGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 59217 0.66 0.796014
Target:  5'- gCGCCGUGcGcuugCACgcgucgGCCGuCGGCGAu -3'
miRNA:   3'- aGCGGCGCuCa---GUGaa----CGGC-GUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 62115 0.66 0.796014
Target:  5'- gUUGuCCGCG-GcCGC-UGCCGCGGCc- -3'
miRNA:   3'- -AGC-GGCGCuCaGUGaACGGCGUCGcu -5'
6375 3' -58.5 NC_001847.1 + 66332 0.66 0.796014
Target:  5'- cUGCgGCGGGUggggCGCgggcgccGCCGUGGCGAu -3'
miRNA:   3'- aGCGgCGCUCA----GUGaa-----CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 35607 0.66 0.796014
Target:  5'- cUGCUGCGcaUCACgccGCCGcCGGCGGc -3'
miRNA:   3'- aGCGGCGCucAGUGaa-CGGC-GUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 52098 0.66 0.796014
Target:  5'- gCGCCGCGGcccaagcgCACUagcgGCCGCgggccGGCGGc -3'
miRNA:   3'- aGCGGCGCUca------GUGAa---CGGCG-----UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 111276 0.66 0.796014
Target:  5'- gCGCUGCGAaagCACUUuaCGC-GCGAg -3'
miRNA:   3'- aGCGGCGCUca-GUGAAcgGCGuCGCU- -5'
6375 3' -58.5 NC_001847.1 + 53460 0.66 0.796014
Target:  5'- gCGCaGCGAG-CACUcGCCcgcgaGCAGCGu -3'
miRNA:   3'- aGCGgCGCUCaGUGAaCGG-----CGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 54515 0.66 0.796014
Target:  5'- gCGCCGCc-GUCGCcaucggcaaCCGCGGCGGg -3'
miRNA:   3'- aGCGGCGcuCAGUGaac------GGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 69325 0.66 0.796014
Target:  5'- aCGCCGUGGGcCAgcaGCCGCgcagcuAGCGGa -3'
miRNA:   3'- aGCGGCGCUCaGUgaaCGGCG------UCGCU- -5'
6375 3' -58.5 NC_001847.1 + 129380 0.66 0.796014
Target:  5'- aCGCCGCGcuUCGCguuggcgcGCCGgaCGGCGGu -3'
miRNA:   3'- aGCGGCGCucAGUGaa------CGGC--GUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 81047 0.66 0.794222
Target:  5'- gCGCgGCGAG-CGCcucuaggUUGCCggcgaagGCGGCGAc -3'
miRNA:   3'- aGCGgCGCUCaGUG-------AACGG-------CGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 101050 0.66 0.786995
Target:  5'- cCGCCgcGCGAGcCACggcgGCCGCcacGCGc -3'
miRNA:   3'- aGCGG--CGCUCaGUGaa--CGGCGu--CGCu -5'
6375 3' -58.5 NC_001847.1 + 96934 0.66 0.786995
Target:  5'- gCGUauaGCGGGUCGCc-GCUaGCGGCGGc -3'
miRNA:   3'- aGCGg--CGCUCAGUGaaCGG-CGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 3920 0.66 0.786995
Target:  5'- gCGCCgguuGCGcGcccgCGCUggcGCCGCGGCGGg -3'
miRNA:   3'- aGCGG----CGCuCa---GUGAa--CGGCGUCGCU- -5'
6375 3' -58.5 NC_001847.1 + 68838 0.66 0.786995
Target:  5'- gCGCCGCGAagagcucgggCGCgagGCgGCGGCGu -3'
miRNA:   3'- aGCGGCGCUca--------GUGaa-CGgCGUCGCu -5'
6375 3' -58.5 NC_001847.1 + 106733 0.66 0.786995
Target:  5'- gCGCCgguuGCGcGcccgCGCUggcGCCGCGGCGGg -3'
miRNA:   3'- aGCGG----CGCuCa---GUGAa--CGGCGUCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.