miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 3' -54 NC_001847.1 + 96803 0.66 0.95222
Target:  5'- -gCUGGg--UCGggggGCGCGCAGCGg -3'
miRNA:   3'- ugGACCagaAGCaca-UGUGCGUCGCg -5'
6376 3' -54 NC_001847.1 + 96012 0.66 0.95222
Target:  5'- aACCUGcGgCUcaacgcCGUGUACguagcccugucGCGCAGCGUg -3'
miRNA:   3'- -UGGAC-CaGAa-----GCACAUG-----------UGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 54036 0.66 0.95222
Target:  5'- uUCUGGaugUCcUCGUcgGCGCGCGGCGa -3'
miRNA:   3'- uGGACC---AGaAGCAcaUGUGCGUCGCg -5'
6376 3' -54 NC_001847.1 + 60913 0.66 0.95222
Target:  5'- cACCUcGGggcaggCUUCGU--ACACGCgagccacauAGCGCg -3'
miRNA:   3'- -UGGA-CCa-----GAAGCAcaUGUGCG---------UCGCG- -5'
6376 3' -54 NC_001847.1 + 33920 0.66 0.95222
Target:  5'- cGCCUGuGgcagcCUUCGgccgGUAC-CGCgaGGCGCu -3'
miRNA:   3'- -UGGAC-Ca----GAAGCa---CAUGuGCG--UCGCG- -5'
6376 3' -54 NC_001847.1 + 16289 0.66 0.95222
Target:  5'- cGCCggcgGGUCgaCGUaUACcgucaccCGCGGCGCg -3'
miRNA:   3'- -UGGa---CCAGaaGCAcAUGu------GCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 97801 0.66 0.95222
Target:  5'- uCCgcacGGUCgcgcgCGUGgcCGCGUcgGGCGCg -3'
miRNA:   3'- uGGa---CCAGaa---GCACauGUGCG--UCGCG- -5'
6376 3' -54 NC_001847.1 + 37695 0.66 0.947973
Target:  5'- cGCgCUGGaCcUCGUcacGUGCGCGCugcugcugGGCGCg -3'
miRNA:   3'- -UG-GACCaGaAGCA---CAUGUGCG--------UCGCG- -5'
6376 3' -54 NC_001847.1 + 12388 0.66 0.947973
Target:  5'- gGCCcGGac--CGUGUAUGCGCAGCa- -3'
miRNA:   3'- -UGGaCCagaaGCACAUGUGCGUCGcg -5'
6376 3' -54 NC_001847.1 + 50059 0.66 0.947973
Target:  5'- gGCCgcgGGUCc------GCGCGCGGCGCg -3'
miRNA:   3'- -UGGa--CCAGaagcacaUGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 76504 0.66 0.947973
Target:  5'- gACCcGGcggaaaUCUUCGUGgcccagaugAUGCgGCAGCGCu -3'
miRNA:   3'- -UGGaCC------AGAAGCACa--------UGUG-CGUCGCG- -5'
6376 3' -54 NC_001847.1 + 22602 0.66 0.943942
Target:  5'- cGCCcGGUCgcguggcaagcgaGUGgcCGCGCAGgGCg -3'
miRNA:   3'- -UGGaCCAGaag----------CACauGUGCGUCgCG- -5'
6376 3' -54 NC_001847.1 + 125415 0.66 0.943942
Target:  5'- cGCCcGGUCgcguggcaagcgaGUGgcCGCGCAGgGCg -3'
miRNA:   3'- -UGGaCCAGaag----------CACauGUGCGUCgCG- -5'
6376 3' -54 NC_001847.1 + 116363 0.66 0.943482
Target:  5'- -gCUGGUgUgCGUgGUGCugGC-GCGCu -3'
miRNA:   3'- ugGACCAgAaGCA-CAUGugCGuCGCG- -5'
6376 3' -54 NC_001847.1 + 66801 0.66 0.943482
Target:  5'- gUCUGGgcgUCG-GUAgGCGgGGCGCu -3'
miRNA:   3'- uGGACCagaAGCaCAUgUGCgUCGCG- -5'
6376 3' -54 NC_001847.1 + 71056 0.66 0.943482
Target:  5'- uUCUGGaCguggaccCG-GUGCugGCGGCGCu -3'
miRNA:   3'- uGGACCaGaa-----GCaCAUGugCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 93664 0.66 0.943482
Target:  5'- aGCUg---CUUCGUGcGCAUGCcGCGCg -3'
miRNA:   3'- -UGGaccaGAAGCACaUGUGCGuCGCG- -5'
6376 3' -54 NC_001847.1 + 101829 0.66 0.943482
Target:  5'- gGCC--GUCUUCgGUGUGCGcCGUuGCGCc -3'
miRNA:   3'- -UGGacCAGAAG-CACAUGU-GCGuCGCG- -5'
6376 3' -54 NC_001847.1 + 93341 0.66 0.938746
Target:  5'- cGCCacGUCcUCGUa-GCGCGCGGCGUu -3'
miRNA:   3'- -UGGacCAGaAGCAcaUGUGCGUCGCG- -5'
6376 3' -54 NC_001847.1 + 54372 0.66 0.938746
Target:  5'- gGCCgGGUCguccCG-GUcCGCGCcGGCGCg -3'
miRNA:   3'- -UGGaCCAGaa--GCaCAuGUGCG-UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.