miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6376 5' -60.9 NC_001847.1 + 110891 0.66 0.679991
Target:  5'- gGGGGGCcugUCcaccacggcgagGCGCcgacCCACGUGGCCc- -3'
miRNA:   3'- -CUCCCGaa-AG------------CGCG----GGUGCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 124210 0.66 0.679991
Target:  5'- gGAGGGgaUUCGgGCCgGCcgaggauucgGGCCGg -3'
miRNA:   3'- -CUCCCgaAAGCgCGGgUGca--------CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 104908 0.66 0.679991
Target:  5'- cGGGGCccgCGCGgCgGCG-GGCCGc -3'
miRNA:   3'- cUCCCGaaaGCGCgGgUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 87356 0.66 0.679991
Target:  5'- cGAGGGCcuggccgaGCaCCCGgcCGUGGCCGc -3'
miRNA:   3'- -CUCCCGaaag----CGcGGGU--GCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 28420 0.66 0.679991
Target:  5'- cGGGGCUUa-GCGCCCugGcgcacGCCGc -3'
miRNA:   3'- cUCCCGAAagCGCGGGugCac---CGGCa -5'
6376 5' -60.9 NC_001847.1 + 36210 0.66 0.679991
Target:  5'- aGGGGCUg-CGCGCCCuCcUGGCgGc -3'
miRNA:   3'- cUCCCGAaaGCGCGGGuGcACCGgCa -5'
6376 5' -60.9 NC_001847.1 + 103342 0.66 0.679991
Target:  5'- gGAGGGCaa--GUGCCCgacgcggggaACGUGGCgGc -3'
miRNA:   3'- -CUCCCGaaagCGCGGG----------UGCACCGgCa -5'
6376 5' -60.9 NC_001847.1 + 110908 0.66 0.679991
Target:  5'- --cGGCgaggCGcCGaCCCACGUGGCCc- -3'
miRNA:   3'- cucCCGaaa-GC-GC-GGGUGCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 15537 0.66 0.679991
Target:  5'- -cGGGCUgcugGCGCCggugcgCGCGcGGCCGUc -3'
miRNA:   3'- cuCCCGAaag-CGCGG------GUGCaCCGGCA- -5'
6376 5' -60.9 NC_001847.1 + 56797 0.66 0.679991
Target:  5'- ---cGUUcgUCGCGCUCACGgGGCCGg -3'
miRNA:   3'- cuccCGAa-AGCGCGGGUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 28893 0.66 0.679991
Target:  5'- uGGGcGCUgcCGCacguggcgGCCUGCGUGGCCa- -3'
miRNA:   3'- cUCC-CGAaaGCG--------CGGGUGCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 2095 0.66 0.679991
Target:  5'- cGGGGCccgCGCGgCgGCG-GGCCGc -3'
miRNA:   3'- cUCCCGaaaGCGCgGgUGCaCCGGCa -5'
6376 5' -60.9 NC_001847.1 + 8095 0.66 0.679991
Target:  5'- --cGGCgaggCGcCGaCCCACGUGGCCc- -3'
miRNA:   3'- cucCCGaaa-GC-GC-GGGUGCACCGGca -5'
6376 5' -60.9 NC_001847.1 + 113620 0.66 0.679991
Target:  5'- -uGGGCg--CGUugGCCCGCGcGGCCc- -3'
miRNA:   3'- cuCCCGaaaGCG--CGGGUGCaCCGGca -5'
6376 5' -60.9 NC_001847.1 + 529 0.66 0.679991
Target:  5'- gGAGGGCaa--GUGCCCgacgcggggaACGUGGCgGc -3'
miRNA:   3'- -CUCCCGaaagCGCGGG----------UGCACCGgCa -5'
6376 5' -60.9 NC_001847.1 + 21397 0.66 0.679991
Target:  5'- gGAGGGgaUUCGgGCCgGCcgaggauucgGGCCGg -3'
miRNA:   3'- -CUCCCgaAAGCgCGGgUGca--------CCGGCa -5'
6376 5' -60.9 NC_001847.1 + 46481 0.66 0.679991
Target:  5'- cAGGGCcUUCcaCGUCgcaGCGUGGCCGa -3'
miRNA:   3'- cUCCCGaAAGc-GCGGg--UGCACCGGCa -5'
6376 5' -60.9 NC_001847.1 + 120925 0.66 0.670024
Target:  5'- cGAGGGCggggcgggCGCGCggGCGUGGUgGc -3'
miRNA:   3'- -CUCCCGaaa-----GCGCGggUGCACCGgCa -5'
6376 5' -60.9 NC_001847.1 + 7155 0.66 0.670024
Target:  5'- -cGGGCgugUCGCGCUCGCucgcccgGGCgGUu -3'
miRNA:   3'- cuCCCGaa-AGCGCGGGUGca-----CCGgCA- -5'
6376 5' -60.9 NC_001847.1 + 109968 0.66 0.670024
Target:  5'- -cGGGCgugUCGCGCUCGCucgcccgGGCgGUu -3'
miRNA:   3'- cuCCCGaa-AGCGCGGGUGca-----CCGgCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.