miRNA display CGI


Results 1 - 20 of 1550 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6377 3' -60.3 NC_001847.1 + 17649 0.66 0.750188
Target:  5'- aGCCcaGCCGAcgucgacgacGU-CGGCGGCuCGCGguCCGCc -3'
miRNA:   3'- -CGG--CGGCU----------CAuGCCGUUG-GCGC--GGCG- -5'
6377 3' -60.3 NC_001847.1 + 4925 0.66 0.750188
Target:  5'- -gCGCCG---GCGGCAACaGCGCCc- -3'
miRNA:   3'- cgGCGGCucaUGCCGUUGgCGCGGcg -5'
6377 3' -60.3 NC_001847.1 + 3209 0.66 0.750188
Target:  5'- uCCGCC-AGcuCGcGCAGCCGCucgcgcGCCGCc -3'
miRNA:   3'- cGGCGGcUCauGC-CGUUGGCG------CGGCG- -5'
6377 3' -60.3 NC_001847.1 + 125462 0.66 0.750188
Target:  5'- aCgGgCGGGUcgGCGGCAGCuCGCGgCGg -3'
miRNA:   3'- cGgCgGCUCA--UGCCGUUG-GCGCgGCg -5'
6377 3' -60.3 NC_001847.1 + 106022 0.66 0.750188
Target:  5'- uCCGCC-AGcuCGcGCAGCCGCucgcgcGCCGCc -3'
miRNA:   3'- cGGCGGcUCauGC-CGUUGGCG------CGGCG- -5'
6377 3' -60.3 NC_001847.1 + 61974 0.66 0.750188
Target:  5'- cGCCGCCGcGUcCGccuccuccGCccGgCGCGCCGCc -3'
miRNA:   3'- -CGGCGGCuCAuGC--------CGu-UgGCGCGGCG- -5'
6377 3' -60.3 NC_001847.1 + 84580 0.66 0.750188
Target:  5'- cGUCGUCaGAGgcgacgccGCGGUccAGCaGCGCCGCu -3'
miRNA:   3'- -CGGCGG-CUCa-------UGCCG--UUGgCGCGGCG- -5'
6377 3' -60.3 NC_001847.1 + 52820 0.66 0.750188
Target:  5'- gGUCGCuCGucgcCGGCGACCcCGcCCGCa -3'
miRNA:   3'- -CGGCG-GCucauGCCGUUGGcGC-GGCG- -5'
6377 3' -60.3 NC_001847.1 + 80327 0.66 0.750188
Target:  5'- --gGCCGug-GCGGCAaacaGCgGCGCCaGCu -3'
miRNA:   3'- cggCGGCucaUGCCGU----UGgCGCGG-CG- -5'
6377 3' -60.3 NC_001847.1 + 35539 0.66 0.750188
Target:  5'- uCCGCCGG--ACuGCAGCCccGCGCCa- -3'
miRNA:   3'- cGGCGGCUcaUGcCGUUGG--CGCGGcg -5'
6377 3' -60.3 NC_001847.1 + 43651 0.66 0.750188
Target:  5'- -gCGCgCGAGgGCucgGGUGGCC-CGCCGCa -3'
miRNA:   3'- cgGCG-GCUCaUG---CCGUUGGcGCGGCG- -5'
6377 3' -60.3 NC_001847.1 + 97624 0.66 0.750188
Target:  5'- aCCGUCGAGggugcguccagGCGGCGcGCCaaaaagGCGUCGUa -3'
miRNA:   3'- cGGCGGCUCa----------UGCCGU-UGG------CGCGGCG- -5'
6377 3' -60.3 NC_001847.1 + 110904 0.66 0.750188
Target:  5'- cCCGCCGc--GCGGCGGCUGaacguggagauCGCCGa -3'
miRNA:   3'- cGGCGGCucaUGCCGUUGGC-----------GCGGCg -5'
6377 3' -60.3 NC_001847.1 + 90708 0.66 0.750188
Target:  5'- cGCgCGCCGcgcccccGUGCGcgaacGCAGCCGCucGCgGCg -3'
miRNA:   3'- -CG-GCGGCu------CAUGC-----CGUUGGCG--CGgCG- -5'
6377 3' -60.3 NC_001847.1 + 79851 0.66 0.750188
Target:  5'- cGCCGCUGGGacacgACuGCcGCCcguccgggcccgGCGCCGUu -3'
miRNA:   3'- -CGGCGGCUCa----UGcCGuUGG------------CGCGGCG- -5'
6377 3' -60.3 NC_001847.1 + 67634 0.66 0.750188
Target:  5'- cGCCgGCgGAG-ACGGCGGCgGCuaCGa -3'
miRNA:   3'- -CGG-CGgCUCaUGCCGUUGgCGcgGCg -5'
6377 3' -60.3 NC_001847.1 + 47208 0.66 0.750188
Target:  5'- cGCuCaCCGcGUGC-GCGGCCGCGCCcaGCc -3'
miRNA:   3'- -CG-GcGGCuCAUGcCGUUGGCGCGG--CG- -5'
6377 3' -60.3 NC_001847.1 + 22600 0.66 0.750188
Target:  5'- cCCGCCcGGUcgcguggcaaGCGaGUGGCCGCGCagggCGCg -3'
miRNA:   3'- cGGCGGcUCA----------UGC-CGUUGGCGCG----GCG- -5'
6377 3' -60.3 NC_001847.1 + 9836 0.66 0.750188
Target:  5'- cGCCGCCauGAGccACGGcCAGCCuuGCCcCa -3'
miRNA:   3'- -CGGCGG--CUCa-UGCC-GUUGGcgCGGcG- -5'
6377 3' -60.3 NC_001847.1 + 363 0.66 0.750188
Target:  5'- cGCC-CCGGGgcCcGCccCgCGCGCCGCg -3'
miRNA:   3'- -CGGcGGCUCauGcCGuuG-GCGCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.