Results 1 - 20 of 194 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6379 | 5' | -56.9 | NC_001847.1 | + | 15539 | 0.66 | 0.888465 |
Target: 5'- cGCGGGccucgucgucGCCGGGUGGcGCGGGGGAa-- -3' miRNA: 3'- -CGCUCa---------CGGCUCGCC-UGCUCCUUgcu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 26872 | 0.66 | 0.888465 |
Target: 5'- cCGAGUGCCuGAuGCGGgaacGCGcGGcAGCGGa -3' miRNA: 3'- cGCUCACGG-CU-CGCC----UGCuCC-UUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 84362 | 0.66 | 0.888465 |
Target: 5'- cGCGAgGUGUauUGAGCGGcCGcGGAccGCGGc -3' miRNA: 3'- -CGCU-CACG--GCUCGCCuGCuCCU--UGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 41440 | 0.66 | 0.888465 |
Target: 5'- uGCGAGUcGCCgGGGCccAUGAaccGGAACGAg -3' miRNA: 3'- -CGCUCA-CGG-CUCGccUGCU---CCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 64166 | 0.66 | 0.888465 |
Target: 5'- uGC-AG-GCCGcuugcGCGGACGGGGcGGCGGg -3' miRNA: 3'- -CGcUCaCGGCu----CGCCUGCUCC-UUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 83038 | 0.66 | 0.888465 |
Target: 5'- cGCGGGccgcguggccaUGaCCGAGCGcACGAGGuugcuggcGGCGAa -3' miRNA: 3'- -CGCUC-----------AC-GGCUCGCcUGCUCC--------UUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 83250 | 0.66 | 0.881623 |
Target: 5'- gGCGGcgGCCGAaaGCGcGGCG-GGGGCGGg -3' miRNA: 3'- -CGCUcaCGGCU--CGC-CUGCuCCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 37208 | 0.66 | 0.881623 |
Target: 5'- gGCGcccGGUGCCGcuuGGCGG-CGGcGcGGACGAc -3' miRNA: 3'- -CGC---UCACGGC---UCGCCuGCU-C-CUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 32008 | 0.66 | 0.881623 |
Target: 5'- cGCGGGcGUgGAGCGcgaagcuccGGCGGGGcGCGGg -3' miRNA: 3'- -CGCUCaCGgCUCGC---------CUGCUCCuUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 32790 | 0.66 | 0.881623 |
Target: 5'- gGgGAGgGCCGggGGCGGACGGcgcguuGGAGCc- -3' miRNA: 3'- -CgCUCaCGGC--UCGCCUGCU------CCUUGcu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 77255 | 0.66 | 0.881623 |
Target: 5'- cGCGGGcGCUG-GCGGGCGAcacccucguGGcGACGGc -3' miRNA: 3'- -CGCUCaCGGCuCGCCUGCU---------CC-UUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 134821 | 0.66 | 0.881623 |
Target: 5'- cGCGGGcGUgGAGCGcgaagcuccGGCGGGGcGCGGg -3' miRNA: 3'- -CGCUCaCGgCUCGC---------CUGCUCCuUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 99808 | 0.66 | 0.881623 |
Target: 5'- uGCGGG-GUCgGAGCGGcCGGGGGcCGc -3' miRNA: 3'- -CGCUCaCGG-CUCGCCuGCUCCUuGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 32600 | 0.66 | 0.881623 |
Target: 5'- cGCGGccGCCGucGCGGcCGAcacGGAGCGGc -3' miRNA: 3'- -CGCUcaCGGCu-CGCCuGCU---CCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 28061 | 0.66 | 0.880927 |
Target: 5'- gGCGccccucaAG-GCCGaAGCGGggacugagGCGGGGGGCGGc -3' miRNA: 3'- -CGC-------UCaCGGC-UCGCC--------UGCUCCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 108293 | 0.66 | 0.880927 |
Target: 5'- uCGGGUGCCuGGGCGGAcugcucuCGuGGAccACGc -3' miRNA: 3'- cGCUCACGG-CUCGCCU-------GCuCCU--UGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 130874 | 0.66 | 0.880927 |
Target: 5'- gGCGccccucaAG-GCCGaAGCGGggacugagGCGGGGGGCGGc -3' miRNA: 3'- -CGC-------UCaCGGC-UCGCC--------UGCUCCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 96940 | 0.66 | 0.874565 |
Target: 5'- aGCGGGUcGCCGcuAGCGG-CGGcaaaguccGGGACGu -3' miRNA: 3'- -CGCUCA-CGGC--UCGCCuGCU--------CCUUGCu -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 52517 | 0.66 | 0.874565 |
Target: 5'- cGCGcG-GCCGcGCGGccCGGGGGAUGGu -3' miRNA: 3'- -CGCuCaCGGCuCGCCu-GCUCCUUGCU- -5' |
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6379 | 5' | -56.9 | NC_001847.1 | + | 16113 | 0.66 | 0.874565 |
Target: 5'- uCGAGUGaCGAcGacgaGGACGAGGGcaaggACGAg -3' miRNA: 3'- cGCUCACgGCU-Cg---CCUGCUCCU-----UGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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