miRNA display CGI


Results 1 - 20 of 194 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6379 5' -56.9 NC_001847.1 + 83038 0.66 0.888465
Target:  5'- cGCGGGccgcguggccaUGaCCGAGCGcACGAGGuugcuggcGGCGAa -3'
miRNA:   3'- -CGCUC-----------AC-GGCUCGCcUGCUCC--------UUGCU- -5'
6379 5' -56.9 NC_001847.1 + 26872 0.66 0.888465
Target:  5'- cCGAGUGCCuGAuGCGGgaacGCGcGGcAGCGGa -3'
miRNA:   3'- cGCUCACGG-CU-CGCC----UGCuCC-UUGCU- -5'
6379 5' -56.9 NC_001847.1 + 41440 0.66 0.888465
Target:  5'- uGCGAGUcGCCgGGGCccAUGAaccGGAACGAg -3'
miRNA:   3'- -CGCUCA-CGG-CUCGccUGCU---CCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 64166 0.66 0.888465
Target:  5'- uGC-AG-GCCGcuugcGCGGACGGGGcGGCGGg -3'
miRNA:   3'- -CGcUCaCGGCu----CGCCUGCUCC-UUGCU- -5'
6379 5' -56.9 NC_001847.1 + 84362 0.66 0.888465
Target:  5'- cGCGAgGUGUauUGAGCGGcCGcGGAccGCGGc -3'
miRNA:   3'- -CGCU-CACG--GCUCGCCuGCuCCU--UGCU- -5'
6379 5' -56.9 NC_001847.1 + 15539 0.66 0.888465
Target:  5'- cGCGGGccucgucgucGCCGGGUGGcGCGGGGGAa-- -3'
miRNA:   3'- -CGCUCa---------CGGCUCGCC-UGCUCCUUgcu -5'
6379 5' -56.9 NC_001847.1 + 99808 0.66 0.881623
Target:  5'- uGCGGG-GUCgGAGCGGcCGGGGGcCGc -3'
miRNA:   3'- -CGCUCaCGG-CUCGCCuGCUCCUuGCu -5'
6379 5' -56.9 NC_001847.1 + 83250 0.66 0.881623
Target:  5'- gGCGGcgGCCGAaaGCGcGGCG-GGGGCGGg -3'
miRNA:   3'- -CGCUcaCGGCU--CGC-CUGCuCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 32790 0.66 0.881623
Target:  5'- gGgGAGgGCCGggGGCGGACGGcgcguuGGAGCc- -3'
miRNA:   3'- -CgCUCaCGGC--UCGCCUGCU------CCUUGcu -5'
6379 5' -56.9 NC_001847.1 + 32008 0.66 0.881623
Target:  5'- cGCGGGcGUgGAGCGcgaagcuccGGCGGGGcGCGGg -3'
miRNA:   3'- -CGCUCaCGgCUCGC---------CUGCUCCuUGCU- -5'
6379 5' -56.9 NC_001847.1 + 134821 0.66 0.881623
Target:  5'- cGCGGGcGUgGAGCGcgaagcuccGGCGGGGcGCGGg -3'
miRNA:   3'- -CGCUCaCGgCUCGC---------CUGCUCCuUGCU- -5'
6379 5' -56.9 NC_001847.1 + 37208 0.66 0.881623
Target:  5'- gGCGcccGGUGCCGcuuGGCGG-CGGcGcGGACGAc -3'
miRNA:   3'- -CGC---UCACGGC---UCGCCuGCU-C-CUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 77255 0.66 0.881623
Target:  5'- cGCGGGcGCUG-GCGGGCGAcacccucguGGcGACGGc -3'
miRNA:   3'- -CGCUCaCGGCuCGCCUGCU---------CC-UUGCU- -5'
6379 5' -56.9 NC_001847.1 + 32600 0.66 0.881623
Target:  5'- cGCGGccGCCGucGCGGcCGAcacGGAGCGGc -3'
miRNA:   3'- -CGCUcaCGGCu-CGCCuGCU---CCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 28061 0.66 0.880927
Target:  5'- gGCGccccucaAG-GCCGaAGCGGggacugagGCGGGGGGCGGc -3'
miRNA:   3'- -CGC-------UCaCGGC-UCGCC--------UGCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 130874 0.66 0.880927
Target:  5'- gGCGccccucaAG-GCCGaAGCGGggacugagGCGGGGGGCGGc -3'
miRNA:   3'- -CGC-------UCaCGGC-UCGCC--------UGCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 108293 0.66 0.880927
Target:  5'- uCGGGUGCCuGGGCGGAcugcucuCGuGGAccACGc -3'
miRNA:   3'- cGCUCACGG-CUCGCCU-------GCuCCU--UGCu -5'
6379 5' -56.9 NC_001847.1 + 52517 0.66 0.874565
Target:  5'- cGCGcG-GCCGcGCGGccCGGGGGAUGGu -3'
miRNA:   3'- -CGCuCaCGGCuCGCCu-GCUCCUUGCU- -5'
6379 5' -56.9 NC_001847.1 + 15028 0.66 0.874565
Target:  5'- cGCGAGccgcgGCCGc-CGGGCGAGcuguGCGAg -3'
miRNA:   3'- -CGCUCa----CGGCucGCCUGCUCcu--UGCU- -5'
6379 5' -56.9 NC_001847.1 + 96940 0.66 0.874565
Target:  5'- aGCGGGUcGCCGcuAGCGG-CGGcaaaguccGGGACGu -3'
miRNA:   3'- -CGCUCA-CGGC--UCGCCuGCU--------CCUUGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.