Results 1 - 20 of 767 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6380 | 5' | -67 | NC_001847.1 | + | 107288 | 0.65 | 0.403154 |
Target: 5'- gCGCGGCCCacaGGGCccgcacgGGGUcuccgcucaugucaGCCGC-GCGu -3' miRNA: 3'- -GCGCCGGGg--CCCG-------UCCG--------------CGGUGuCGU- -5' |
|||||||
6380 | 5' | -67 | NC_001847.1 | + | 69274 | 0.66 | 0.398316 |
Target: 5'- gGCGGCCgCGGGCuuccucuacgcGGGCGUgcgGGCGg -3' miRNA: 3'- gCGCCGGgGCCCG-----------UCCGCGgugUCGU- -5' |
|||||||
6380 | 5' | -67 | NC_001847.1 | + | 53367 | 0.66 | 0.398316 |
Target: 5'- gGCGGCCgCGGGCaccgcgAGcGCGCCu--GCc -3' miRNA: 3'- gCGCCGGgGCCCG------UC-CGCGGuguCGu -5' |
|||||||
6380 | 5' | -67 | NC_001847.1 | + | 98739 | 0.66 | 0.398316 |
Target: 5'- cCGgGG-CCgGGGCcGGgGCCGgGGCAu -3' miRNA: 3'- -GCgCCgGGgCCCGuCCgCGGUgUCGU- -5' |
|||||||
6380 | 5' | -67 | NC_001847.1 | + | 45858 | 0.66 | 0.398316 |
Target: 5'- cCGaGGCCUCGGccGCGGcGCGCgaaACAGCGu -3' miRNA: 3'- -GCgCCGGGGCC--CGUC-CGCGg--UGUCGU- -5' |
|||||||
6380 | 5' | -67 | NC_001847.1 | + | 87887 | 0.66 | 0.398316 |
Target: 5'- gCGCGGCUuuCUGGGCGGG-GCUuu-GCAc -3' miRNA: 3'- -GCGCCGG--GGCCCGUCCgCGGuguCGU- -5' |
|||||||
6380 | 5' | -67 | NC_001847.1 | + | 58493 | 0.66 | 0.398316 |
Target: 5'- gGCGcccuccccGCCCuCGGGCAGG-GCgACGGgCAg -3' miRNA: 3'- gCGC--------CGGG-GCCCGUCCgCGgUGUC-GU- -5' |
|||||||
6380 | 5' | -67 | NC_001847.1 | + | 61325 | 0.66 | 0.398316 |
Target: 5'- gCGCGGggCgGGGCGGGCGCgCcUAGCc -3' miRNA: 3'- -GCGCCggGgCCCGUCCGCG-GuGUCGu -5' |
|||||||
6380 | 5' | -67 | NC_001847.1 | + | 120777 | 0.66 | 0.398316 |
Target: 5'- cCGCGGCCgUGGcaucuGCGaGCGUCgGCAGCAg -3' miRNA: 3'- -GCGCCGGgGCC-----CGUcCGCGG-UGUCGU- -5' |
|||||||
6380 | 5' | -67 | NC_001847.1 | + | 51223 | 0.66 | 0.398316 |
Target: 5'- aGCgGGCCCUGcucGCGGGCgcGCCGCuGCc -3' miRNA: 3'- gCG-CCGGGGCc--CGUCCG--CGGUGuCGu -5' |
|||||||
6380 | 5' | -67 | NC_001847.1 | + | 60971 | 0.66 | 0.397514 |
Target: 5'- gCGCGGCa-UGGGCcccacgccgagAGGCGCCGCcaucauucgccccGGCGc -3' miRNA: 3'- -GCGCCGggGCCCG-----------UCCGCGGUG-------------UCGU- -5' |
|||||||
6380 | 5' | -67 | NC_001847.1 | + | 88386 | 0.66 | 0.397514 |
Target: 5'- -cCGGCCCCgcgcggcGGGCGGGCgcGCCGuCGGg- -3' miRNA: 3'- gcGCCGGGG-------CCCGUCCG--CGGU-GUCgu -5' |
|||||||
6380 | 5' | -67 | NC_001847.1 | + | 101394 | 0.66 | 0.397514 |
Target: 5'- cCGCGGCgCCGccGGCAaucGGgggucucgucuccCGCCGCGGCu -3' miRNA: 3'- -GCGCCGgGGC--CCGU---CC-------------GCGGUGUCGu -5' |
|||||||
6380 | 5' | -67 | NC_001847.1 | + | 75795 | 0.66 | 0.393517 |
Target: 5'- cCGCcGCCgcuccgcccccgaugCCGGGCugguacGGCGCCGcCGGCGc -3' miRNA: 3'- -GCGcCGG---------------GGCCCGu-----CCGCGGU-GUCGU- -5' |
|||||||
6380 | 5' | -67 | NC_001847.1 | + | 20253 | 0.66 | 0.393517 |
Target: 5'- uGCGGCCgCGagagcgagacggcgaGGUcGGCGCCGC-GCGu -3' miRNA: 3'- gCGCCGGgGC---------------CCGuCCGCGGUGuCGU- -5' |
|||||||
6380 | 5' | -67 | NC_001847.1 | + | 12500 | 0.66 | 0.390338 |
Target: 5'- gGCGGCcaagaaCCCGGGCcagacgacgaAGGCgacgacGCCGCAGa- -3' miRNA: 3'- gCGCCG------GGGCCCG----------UCCG------CGGUGUCgu -5' |
|||||||
6380 | 5' | -67 | NC_001847.1 | + | 77388 | 0.66 | 0.390338 |
Target: 5'- aGCaGCCCCGuGGcCAGcGCGCCgaACGGg- -3' miRNA: 3'- gCGcCGGGGC-CC-GUC-CGCGG--UGUCgu -5' |
|||||||
6380 | 5' | -67 | NC_001847.1 | + | 101472 | 0.66 | 0.390338 |
Target: 5'- uGCGccucuaGCCCCGcGCGGGCcgcgGCCACGcGCGc -3' miRNA: 3'- gCGC------CGGGGCcCGUCCG----CGGUGU-CGU- -5' |
|||||||
6380 | 5' | -67 | NC_001847.1 | + | 130176 | 0.66 | 0.390338 |
Target: 5'- aGCGaCCCC--GCGGGCGCC-CGGCc -3' miRNA: 3'- gCGCcGGGGccCGUCCGCGGuGUCGu -5' |
|||||||
6380 | 5' | -67 | NC_001847.1 | + | 74277 | 0.66 | 0.390338 |
Target: 5'- gCGCGGCCgcccucgcgCUGGacGCccuGGCGCCgcGCAGCGc -3' miRNA: 3'- -GCGCCGG---------GGCC--CGu--CCGCGG--UGUCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home